View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_high_42 (Length: 484)
Name: NF11745_high_42
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_high_42 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 18 - 473
Target Start/End: Original strand, 14956073 - 14956530
Alignment:
| Q |
18 |
ccttattgtgacatgcaagcacacgtcgcatactcatcaatccttatatatacacatgcatctctccaaatcttttaatacaaaaa---ccaaccaacac |
114 |
Q |
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| T |
14956073 |
ccttattgtgacatgcaagcacacgtcgcatactcatcaatccttatatatacacatgcatctctacaaatcttt-aatacaaaaattaccaaccaacac |
14956171 |
T |
|
| Q |
115 |
taagtgttnnnnnnntgtcacccttattctattactctctcctttctctatccttcatcataaccatcaaaattttactcaaaatcacatcaagaagact |
214 |
Q |
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|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
14956172 |
taagtgttaaaaaaatgtcatccttattctattactctctcctttctctatccttcatcataaccatcaaaattttactcaaaatcacatcaagaaggct |
14956271 |
T |
|
| Q |
215 |
aaaaaaccttccaccaggtccaccaacaattcctataattggcaacctccaccacctaaaacaccctctccaccgtaccttcacaaccctatcacaaaca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14956272 |
aaaaaaccttccaccaggtccaccaacaattcctataattggcaacctccaccacctaaaacaccctctccaccgtaccttcacaaccctatcacaaaca |
14956371 |
T |
|
| Q |
315 |
tacggtgacatcttttcactttggttcggttcgcgcctagttgtcgttgtttcttccccatctttagcccatgaatgctttaccaaaaacgacatcattt |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||| |
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| T |
14956372 |
tacggtgacatcttttcactttggttcggttcgcgcctagttgtcgttgtttcttccccgtctttagcccatgaatgcttcacaaaaaacgacatcattt |
14956471 |
T |
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| Q |
415 |
tagcgaaccggccacggttcctaaccggaaaatacatcttttacaattacacaacccta |
473 |
Q |
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| T |
14956472 |
tagcgaaccgaccacgtttcctaaccggaaaatacatcttttacaattacacaacccta |
14956530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 244 - 407
Target Start/End: Complemental strand, 38976496 - 38976333
Alignment:
| Q |
244 |
ttcctataattggcaacctccaccacctaaaacaccctctccaccgtaccttcacaaccctatcacaaacatacggtgacatcttttcactttggttcgg |
343 |
Q |
| |
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|||| |||||||||||||| |||||||| |||| || ||||||| ||||||| | |||||| ||| ||| ||||| || ||||||||||||| || |
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| T |
38976496 |
ttcccataattggcaaccttcaccacctcaaacgtcccctccaccacaccttcaaaggcctatctaaaaaatatggtgatgtcatttcactttggtttgg |
38976397 |
T |
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| Q |
344 |
ttcgcgcctagttgtcgttgtttcttccccatctttagcccatgaatgctttaccaaaaacgac |
407 |
Q |
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| T |
38976396 |
ttcacgtcttgtggttgttgtctcttcaccatctttagtccaagaatgttttacaaaaaacgac |
38976333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 197 - 429
Target Start/End: Complemental strand, 39587252 - 39587020
Alignment:
| Q |
197 |
aatcacatcaagaagactaaaaaaccttccaccaggtccaccaacaattcctataattggcaacctccaccacctaaaacaccctctccaccgtaccttc |
296 |
Q |
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||||||| |||||| ||| ||||||||||||||||||||| ||| ||||| || || |||||| | || || || |||||||| || |||||||||||| |
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| T |
39587252 |
aatcacaacaagaaaactcaaaaaccttccaccaggtccatcaagtattccaattataggcaacattcatcaactcaaacacccacttcaccgtaccttc |
39587153 |
T |
|
| Q |
297 |
acaaccctatcacaaacatacggtgacatcttttcactttggttcggttcgcgcctagttgtcgttgtttcttccccatctttagcccatgaatgcttta |
396 |
Q |
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|| || ||||||| ||||||| | ||||||| || |||||||||| || | || ||||||||||| || || ||| | | || ||||| || | |
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| T |
39587152 |
cacactctctcacaaaaatacggtcaagtcttttccctacggttcggttcacgttttgtcgtcgttgtttcatcaccttctgtcgtacacgaatgtttca |
39587053 |
T |
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| Q |
397 |
ccaaaaacgacatcattttagcgaaccggccac |
429 |
Q |
| |
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| T |
39587052 |
caaaaaatgacactattttagcaaaccggccac |
39587020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 216 - 424
Target Start/End: Original strand, 5883891 - 5884099
Alignment:
| Q |
216 |
aaaaaccttccaccaggtccaccaacaattcctataattggcaacctccaccacctaaaacaccctctccaccgtaccttcacaaccctatcacaaacat |
315 |
Q |
| |
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||||||||||||||||| |||| | ||||||||||||| ||||| ||||| || ||||| || ||||||| || ||| ||| ||||||||| || |
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| T |
5883891 |
aaaaaccttccaccaggcccacaatgtcttcctataattggaaaccttcaccaactcaaacaaccactccaccacacattccacaccttatcacaaaaat |
5883990 |
T |
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| Q |
316 |
acggtgacatcttttcactttggttcggttcgcgcctagttgtcgttgtttcttccccatctttagcccatgaatgctttaccaaaaacgacatcatttt |
415 |
Q |
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| || | |||||||| |||||||||||||| || || || || |||||||| || | | |||| || ||||| ||||||||||||||||| |||| |
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| T |
5883991 |
atggccaaatcttttctctttggttcggttctcgtctcgtcgttgttgtttcatcgttaacaatagcacaagaatgttttaccaaaaacgacatagtttt |
5884090 |
T |
|
| Q |
416 |
agcgaaccg |
424 |
Q |
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||||||||| |
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| T |
5884091 |
agcgaaccg |
5884099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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