View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_high_43 (Length: 470)
Name: NF11745_high_43
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_high_43 |
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Alignment Details
Target: chr1 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 20 - 465
Target Start/End: Complemental strand, 10162552 - 10162107
Alignment:
| Q |
20 |
cataggccatgctgctattggcacccccattgaaatggtctctaagatagagttccatccacaatgactcataaaccctcccgttgaagggtggcttaga |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10162552 |
cataggccatgctgctattggcacccccattgaaatggtctctaaggtagagttccatccacaatgactcataaaccctcccgttgaagggtggcttaga |
10162453 |
T |
|
| Q |
120 |
atttccaactggggtgcccaatccctcacaacaaagcccattccttcaactctctcttcaaaccctttcgaaagttcacctcttttcccttcatttttat |
219 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
10162452 |
atttccaactggggtgcccaatccctcacaacaaagcccattccttcaactctctcttcaaacccttttgaaagttcacctcttttcccttcatttttat |
10162353 |
T |
|
| Q |
220 |
caaagatgtctcctttatcagcatctctcaacacccaaataaactttatcttgctttgtttcaatccagttgcaatctgttcaatttcttcatctgtcaa |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10162352 |
caaagatgtctcctttatcagcatctctcaacacccaaataaactttatcttgctttgtttcaatccagttgcaatctgttcaatttcttcatctgtcaa |
10162253 |
T |
|
| Q |
320 |
ggttgttgttgttccaaaagatacatatataactgagtttgtttcttgtttatcaagccattccatgcatgagtgcctaccctttgaatctttcttctcc |
419 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10162252 |
ggttgttgttgttccaaaagatacatatataactgagtttgtttcttgtttatcaagccattccatgcatgagtgcctaccctttgaatctttcttctcc |
10162153 |
T |
|
| Q |
420 |
tgatcaatgcttagagggttgaagggtcccactgccctatgcttct |
465 |
Q |
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||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
10162152 |
tgatcaatggttagagggttgaagggtcccactgcccaatgcttct |
10162107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 20 - 465
Target Start/End: Complemental strand, 1609550 - 1609108
Alignment:
| Q |
20 |
cataggccatgctgctattggcacccccattgaaatggtctctaagatagagttccatccacaatgactcataaaccctcccgttgaagggtggcttaga |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
1609550 |
cataggccatgctgctattggcacccccattgaaatgctctctaaagtagagttccatccgcaatgactcataaaccctcctgttgaagggtggcttaga |
1609451 |
T |
|
| Q |
120 |
atttccaactggggtgcccaatccctcacaacaaagcccattccttcaactctctcttcaaaccctttcgaaagttcacctcttttcccttcatttttat |
219 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| || |
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|
| T |
1609450 |
atttccaactggggtgcccaatccctcacaacaaaccccattccttcaactctctcttcaaacccttttgcaagttcacctcttttcccttcatttccat |
1609351 |
T |
|
| Q |
220 |
caaagatgtctcctttatcagcatctctcaacacccaaataaactttatcttgctttgtttcaatccagttgcaatctgttcaatttcttcatctgtcaa |
319 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
1609350 |
caaatatgtctcctttatcagcatctctcaacacccaaatgaactttatcttgctttgttccaacccagttgcaatctgttcaatttcttcatctgtcaa |
1609251 |
T |
|
| Q |
320 |
ggttgttgttgttccaaaagatacatatataactgagtttgtttcttgtttatcaagccattccatgcatgagtgcctaccctttgaatctttcttctcc |
419 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| | |
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| T |
1609250 |
ggttgttgttgttccaaaagatacatatataactgagtttggttcttgtttatcaagccattccatacataagtgcctaccctttgaatctttcttcttc |
1609151 |
T |
|
| Q |
420 |
tgatcaatgcttagagggttgaagggtcccactgccctatgcttct |
465 |
Q |
| |
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|||||| | ||||||||||||||||| ||||||| |||||||| |
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|
| T |
1609150 |
---tcaatggtaagagggttgaagggtccaactgcccaatgcttct |
1609108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 37722008 - 37721878
Alignment:
| Q |
20 |
cataggccatgctgctattggcacccccattgaaatggtctctaagatagagttccatccacaatgactcataaaccctcccgttgaagggtggcttaga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||| |||| | ||| ||||||||||||||||||||||| || || | |||| || |||| | |
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| T |
37722008 |
cataggccatgctgctattggcacccccatagtaatactctccatacaagaattccatccacaatgactcataaaaccacctatagaagaatgacttaaa |
37721909 |
T |
|
| Q |
120 |
atttccaactggggtgcccaatccctcacaa |
150 |
Q |
| |
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|||||||| || || |||||||| ||||||| |
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| T |
37721908 |
atttccaattgtggggcccaatctctcacaa |
37721878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 235 - 355
Target Start/End: Complemental strand, 37721784 - 37721664
Alignment:
| Q |
235 |
tatcagcatctctcaacacccaaataaactttatcttgctttgtttcaatccagttgcaatctgttcaatttcttcatctgtcaaggttgttgttgttcc |
334 |
Q |
| |
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||||||||||||| || ||||||||||| ||| ||| ||||||| ||| ||| |||||| || | ||||| ||| ||| | |||| |||||| || || |
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| T |
37721784 |
tatcagcatctcttaatacccaaataaatttttgcttactttgttccaacccatttgcaagctctataatttgttcctcttttaaggctgttgtggtccc |
37721685 |
T |
|
| Q |
335 |
aaaagatacatatataactga |
355 |
Q |
| |
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|||||||| ||| || ||||| |
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|
| T |
37721684 |
aaaagatatataaattactga |
37721664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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