View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_high_44 (Length: 468)
Name: NF11745_high_44
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_high_44 |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 18 - 458
Target Start/End: Original strand, 10498757 - 10499200
Alignment:
| Q |
18 |
ggttttactcaaaaacatgtccaaaagctgaaaccattgtcagagatgttatgagaaaagctcttataagagaaccaagaagtgttgcctctgttatgag |
117 |
Q |
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| T |
10498757 |
ggttttactcaaaaacatgtccaaaagctgaaaccattgtcagagatgttatgagaaaagctcttataagagaaccaagaagtgttgcctctgttatgag |
10498856 |
T |
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| Q |
118 |
acttcagtttcatgattgctttgttaatgtatgt--tcgctctctctactctttcttaccatcaaaattctatcttttcaatcagttatcttttttaagt |
215 |
Q |
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| T |
10498857 |
acttcagtttcatgattgctttgttaatgtatgttctctctctctctattctttcttaccatcaaaattctatcttttcaatcagttatcttttttaagt |
10498956 |
T |
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| Q |
216 |
tacaatcttttcaattactataaaatttacgnnnnnnnnnnngttgtttaatcttatatgaatatctactttga-ttattttttgacaaggaatatctac |
314 |
Q |
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| T |
10498957 |
tacaatcttttcaattactataaaatttacgtttttctttttggtgtttaatcttattagaatatctacttcgattttttttttgacaaggaatatctac |
10499056 |
T |
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| Q |
315 |
tttgatgttgcttcaaattacaaaattgaatgtttttagtaagattgaaagcatgtagttttgtaatttgtagatatgagaagttggtacaagactaaaa |
414 |
Q |
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| T |
10499057 |
tttcatgttgcttcaaattacaaaattgaatgtttttagtaagattgaaagcatgtagttttgtaatttgtagatatgagaagttggtacaagactaaaa |
10499156 |
T |
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| Q |
415 |
acaaaatttaagattatagaacttatttttattataattctctg |
458 |
Q |
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| T |
10499157 |
acaaaattcaagattatagaacttatttttattataattctctg |
10499200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 22 - 202
Target Start/End: Complemental strand, 10586483 - 10586304
Alignment:
| Q |
22 |
ttactcaaaaacatgtccaaaagctgaaaccattgtcagagatgttatgagaaaagctcttataagagaaccaagaagtgttgcctctgttatgagactt |
121 |
Q |
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||||||||||||||||||| |||||||||| | ||| ||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||| || |
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| T |
10586483 |
ttactcaaaaacatgtccacaagctgaaacaactgtgagagatgttatgagaaatgctcttaaaaaagaaccaagaagtgttgcctctgttatgagattt |
10586384 |
T |
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| Q |
122 |
cagtttcatgattgctttgttaatgtatgttcgctctctctactctttct--taccatcaaaattctatcttttcaatcagtt |
202 |
Q |
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| T |
10586383 |
caatttcatgattgctttgttaatgtatgtt--ctctctttac-ctttcttataccatcaaaattcaatattttcaatcagtt |
10586304 |
T |
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