View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_high_46 (Length: 466)
Name: NF11745_high_46
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_high_46 |
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Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 15 - 451
Target Start/End: Original strand, 36348163 - 36348602
Alignment:
| Q |
15 |
atgaaatatggatttgttgcgcatttcgtatcttcaaattctcaactatcaagtcctcgcaattagcaaacatcagagcctacaaaaacaaagttagtta |
114 |
Q |
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| T |
36348163 |
atgaaatatggatttgttgcgcatttcgtatcttcaaattctcaactatcaagtcctcgcaattagcaaacgtcagagcctacaaaaacaaagttagtta |
36348262 |
T |
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| Q |
115 |
attaacacgtatttcaatccaattaatatctttgattatgaaagttgtaagcc-gtattctaaacaattcaattggaacagtcaaatcatagttattaaa |
213 |
Q |
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| T |
36348263 |
attaacacgtatttcaatccaattaatatctttgattatgaaagttgtaagcccgtattctaaacaattcaattggaacagtcaaatcatagttattaaa |
36348362 |
T |
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| Q |
214 |
tcaatgttcaatttaaattcaacgactgagatttgactaaatggactaaattgtcgagaaaatgtaggtagaactatgtatacataccgttggagcatcc |
313 |
Q |
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| T |
36348363 |
tcaatgttcaatttaaattcaacgactgagatttgactaaatggactaaattgtcgagaaaatgtaggtagaactatgtatacataccgttggagcatcc |
36348462 |
T |
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| Q |
314 |
ttgcaaggctgaaggnnnnnnnnnngtgaagaggcataagattggtc---ataattaatttgaatatgattaattatatagattcattgatgcataattg |
410 |
Q |
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| T |
36348463 |
ttgcaaggctgaa-gaaaaaaaaaagtgaagaggcataagattggtcataataattaatttgaatatgattaattatatagattcattgatgcataattg |
36348561 |
T |
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| Q |
411 |
acttgattaaaacattgggacgttatttgtgatatcttact |
451 |
Q |
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| T |
36348562 |
acttgattaaaacattgggacgttatttgtgatatcttact |
36348602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 26 - 451
Target Start/End: Original strand, 36359454 - 36359859
Alignment:
| Q |
26 |
atttgttgcgcatttcgtatcttcaaattctcaactatcaagtcctcgcaattagcaaacatcagagcctacaaaaacaaagttagttaattaacacgta |
125 |
Q |
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| T |
36359454 |
atttgttgcgcattttgtattgtcaaatcctcaactattaagtccttgcaactatcaaatgttagagcctacaaaaataaatttagttaattaacaagta |
36359553 |
T |
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| Q |
126 |
tttcaatccaattaatatctttgattatgaaagttgtaagccgtattctaaacaattcaattggaacagtcaaatcatagttattaaatcaatgttcaat |
225 |
Q |
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| T |
36359554 |
t----atccaattaaaatccttgattatgaaat-------ccgta------acaatttaatctgaatagtcaactcatagtcgttaaaccaatgttcaat |
36359636 |
T |
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| Q |
226 |
ttaaattcaacgactgagatttgactaaatggactaaattgtcgagaaaatgt-aggtagaactatgtatacataccgttggagcatccttgcaaggctg |
324 |
Q |
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| T |
36359637 |
ttaaatttaacgattgagatttgactaaacatattaaattgttgatttttttttaggtagagctatgtatacataccgttggagcatccttgcaaggctg |
36359736 |
T |
|
| Q |
325 |
aaggnnnnnnnnnngtgaagaggcataaga---ttggtcataattaatttgaatatgattaattatatagattcattgatgcataattgacttgattaaa |
421 |
Q |
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| T |
36359737 |
caaaaagaaa------gaagattcataaaaaggttggtcataattaatttgaatatgatta-ttatatagattcattgattcataattgacttgattaaa |
36359829 |
T |
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| Q |
422 |
acattgggacgttatttgtgatatcttact |
451 |
Q |
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| T |
36359830 |
atattgggacgttatttgtgatatcttact |
36359859 |
T |
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