View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11745_high_50 (Length: 443)

Name: NF11745_high_50
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11745_high_50
NF11745_high_50
[»] chr3 (1 HSPs)
chr3 (1-443)||(12370953-12371398)
[»] chr8 (2 HSPs)
chr8 (1-322)||(20526340-20526664)
chr8 (72-348)||(10600716-10600998)
[»] chr5 (5 HSPs)
chr5 (1-216)||(26683233-26683449)
chr5 (72-234)||(29755189-29755351)
chr5 (208-375)||(26682678-26682840)
chr5 (72-183)||(5335445-5335556)
chr5 (1-54)||(5335377-5335430)
[»] chr2 (4 HSPs)
chr2 (72-235)||(10973784-10973947)
chr2 (1-366)||(2973587-2973951)
chr2 (71-357)||(17826356-17826652)
chr2 (72-309)||(14230684-14230927)
[»] chr4 (4 HSPs)
chr4 (72-366)||(12354829-12355128)
chr4 (72-207)||(27066970-27067105)
chr4 (72-207)||(27087683-27087818)
chr4 (72-141)||(54027938-54028007)
[»] chr1 (3 HSPs)
chr1 (83-334)||(6949578-6949835)
chr1 (72-334)||(47747200-47747468)
chr1 (72-204)||(47726030-47726162)
[»] scaffold1964 (2 HSPs)
scaffold1964 (3-334)||(749-1082)
scaffold1964 (320-366)||(696-742)
[»] chr6 (1 HSPs)
chr6 (72-234)||(30141174-30141336)
[»] scaffold0643 (1 HSPs)
scaffold0643 (72-154)||(869-951)
[»] chr7 (1 HSPs)
chr7 (74-119)||(27810332-27810377)


Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Original strand, 12370953 - 12371398
Alignment:
Q  1 ggaagcagtgataatgttaccaacttcagttatgtcttcccgaaccgagtaaagtgcannnnnnnnngtaattttagagtcaacttcaaaatccatatta 100  Q
    |||| |||||||||||||||| ||||||||||||||||||||| |||||||||| |||         |||||||||||||||||||||||||||||||||    
T  12370953 ggaaacagtgataatgttaccgacttcagttatgtcttcccgacccgagtaaagagcatttttt---gtaattttagagtcaacttcaaaatccatatta 12371049  T
Q  101 tcaaggtgcatatcactcacctattggagagcatggtaaagacccaatgcttcctctatgttaacaggatatacaccattaaaactgattgttctagcca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12371050 tcaaggtgcatatcactcacctattggagagcatggtaaagacccaatgcttcctctatgtcaacaggatatacaccattaaaactgattgttctagcca 12371149  T
Q  201 aaacaaagactccaccttcatcacggatgcaaatgc------cggttctgttactgtgactggagaacgccgcctcaatgttgcacttcatgtggccatg 294  Q
    |||||||||| |||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  12371150 aaacaaagaccccaccttcatcacggatgcaaatgccgatgccggttctgttactgtgactggagaacgccgcctcaatgttgcacctcatgcggccatg 12371249  T
Q  295 ctcaggaggatgccactgcagctgggcagcagctggaacatcaattgcagcagcgctaacagcttctggttgtaaatcataaggaccagtagctggtgta 394  Q
    ||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12371250 ctcgggaggctgccaccgcagctgggcagcagctggaacatcaattgcagcagcgctaacagctgctggttgtaaatcataaggaccagtagctggtgta 12371349  T
Q  395 atgtagcagcactaatagctgctggagtaatgacagcattagccacatt 443  Q
    ||||||||||||||| |||||||||    ||||||||||||||||||||    
T  12371350 atgtagcagcactaacagctgctggttgcatgacagcattagccacatt 12371398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 157; Significance: 3e-83; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 20526340 - 20526664
Alignment:
Q  1 ggaagcagtgataatgttaccaacttcagttatgtcttcccgaaccgagtaaagtgcannnnnnnnngtaattttagagtcaacttcaaaatccatatta 100  Q
    ||||||| ||||||||||||| ||||||||||||||||||||| |||||||||  |||         || ||||||||||  ||||||||||||||||||    
T  20526340 ggaagcaatgataatgttaccgacttcagttatgtcttcccgacccgagtaaatagcatctttt---gtgattttagagtagacttcaaaatccatatta 20526436  T
Q  101 tcaaggtgcatatcactcacctattggagagcatggtaaagacccaatgcttcctctatgttaacaggatatacaccattaaaactgattgttctagcca 200  Q
    ||||||||||||||| ||||| ||||||||||| ||| |||||||||||||||| | || | ||| ||||| |||||||||||| ||| |||||||||||    
T  20526437 tcaaggtgcatatcattcacccattggagagcaaggtgaagacccaatgcttccccaatatcaaccggatacacaccattaaaattgaatgttctagcca 20526536  T
Q  201 aaacaaagactccaccttcatcacggatgcaaatgcc------ggttctgttactgtgactggagaacgccgcctcaatgttgcacttcatgtggccatg 294  Q
    ||||||||||||||||||||||| |||||||||||||      |||| |||||| |||||| |||||||||||  |||||||||||||||||||||||||    
T  20526537 aaacaaagactccaccttcatcatggatgcaaatgccgatgttggttttgttacggtgactagagaacgccgcaccaatgttgcacttcatgtggccatg 20526636  T
Q  295 ctcaggaggatgccactgcagctgggca 322  Q
    ||||| ||| |||||| |||||||||||    
T  20526637 ctcagaaggctgccaccgcagctgggca 20526664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 72 - 348
Target Start/End: Complemental strand, 10600998 - 10600716
Alignment:
Q  72 ttttagagtcaacttcaaaatccatattatcaaggtgcatatcactcacctattggagagcatggtaaagacccaatgcttcctctatgttaacaggata 171  Q
    |||| ||||||||||||||||| |||||||| | ||||||||||||| || |||| || ||||||||||| || || |||||  |||||| ||| |||||    
T  10600998 ttttggagtcaacttcaaaatcaatattatctaagtgcatatcactcgcccattgaagcgcatggtaaaggcctaaagcttcacctatgtcaaccggata 10600899  T
Q  172 tacaccattaaaactgattgttctagccaaaacaaagactccaccttcatcacggatgcaaat------gccggttctgttactgtgactggagaacgcc 265  Q
    ||||||| ||||  ||| ||||||||||||||||||||||||| |||| ||||| ||||||||      ||| ||| || ||   |||||||||||||||    
T  10600898 tacaccaataaaggtgactgttctagccaaaacaaagactccatcttcgtcacgaatgcaaatgcctacgcctgttttgatatgttgactggagaacgcc 10600799  T
Q  266 gcctcaatgttgcacttcatgtggccatgctcaggaggatgccactgcagctgggcagcagctggaacatcaattgcagcagc 348  Q
    || |||| |||||| |||||  |||||||||| ||||| |||||| || ||||||||||||||||||||||| |||| |||||    
T  10600798 gcatcaacgttgcatttcatacggccatgctcgggaggctgccaccgcggctgggcagcagctggaacatcacttgctgcagc 10600716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 119; Significance: 1e-60; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 26683449 - 26683233
Alignment:
Q  1 ggaagcagtgataatgttaccaacttcagttat----gtcttcccgaaccgagtaaagtgcannnnnnnnngtaattttagagtcaacttcaaaatccat 96  Q
    ||||||| ||||||||||||| |||||||||||    ||||||| || |||||||||| |||         ||||||| ||||| ||||||||||| |||    
T  26683449 ggaagcaatgataatgttaccgacttcagttatatatgtcttccagacccgagtaaagagcatctttt---gtaatttaagagtaaacttcaaaattcat 26683353  T
Q  97 attatcaaggtgcatatcactcacctattggagagcatggtaaagacccaatgcttcctctatgttaacaggatatacaccattaaaactgattgttcta 196  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  26683352 attatcaaggtgcatatcactcacccattggagagcatggtaaagaccagatgcttcccctatgtcaacaggatatacaccattaaaactgattgttcta 26683253  T
Q  197 gccaaaacaaagactccacc 216  Q
    ||||||||||||||||||||    
T  26683252 gccaaaacaaagactccacc 26683233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 72 - 234
Target Start/End: Original strand, 29755189 - 29755351
Alignment:
Q  72 ttttagagtcaacttcaaaatccatattatcaaggtgcatatcactcacctattggagagcatggtaaagacccaatgcttcctctatgttaacaggata 171  Q
    |||||||||| ||||||||||| || ||||||| ||||||||| |||||| |||| || |||||||||||  |||| |||||| | |||| ||| |||||    
T  29755189 ttttagagtcgacttcaaaatcaatgttatcaaagtgcatatcgctcacccattgaagcgcatggtaaaggtccaaagcttccccaatgtcaaccggata 29755288  T
Q  172 tacaccattaaaactgattgttctagccaaaacaaagactccaccttcatcacggatgcaaat 234  Q
     |||||| |||| || |||||||||||||| ||||| ||||| ||||| ||||||||||||||    
T  29755289 gacaccaataaagctaattgttctagccaacacaaaaactcccccttcgtcacggatgcaaat 29755351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 208 - 375
Target Start/End: Complemental strand, 26682840 - 26682678
Alignment:
Q  208 gactccaccttcatcacggatgcaaatgccg------gttctgttactgtgactggagaacgccgcctcaatgttgcacttcatgtggccatgctcagga 301  Q
    ||||||||||||||||||| |||||||||||      ||||| |||| |||||||||||||||| | |  ||||||||||| ||| ||||||||||||||    
T  26682840 gactccaccttcatcacggctgcaaatgccgatgtcggttctcttacggtgactggagaacgccacgttgatgttgcactttatgcggccatgctcagga 26682741  T
Q  302 ggatgccactgcagctgggcagcagctggaacatcaattgcagcagcgctaacagcttctggttgtaaatcata 375  Q
    || |||||| | ||||||           |||||||||||||| ||||||||||||| ||||||||||||||||    
T  26682740 ggctgccaccgtagctgg-----------aacatcaattgcagtagcgctaacagctgctggttgtaaatcata 26682678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 5335445 - 5335556
Alignment:
Q  72 ttttagagtcaacttcaaaatccatattatcaaggtgcatatcactcacctattggagagcatggtaaagacccaatgcttcctctatgttaacaggata 171  Q
    |||||||||| ||||||||||  || |||||||| |||||||| ||| || |||| || |||||||||||  |||| |||||| | |||| ||| |||||    
T  5335445 ttttagagtcgacttcaaaattaatgttatcaagatgcatatcgctcgcccattgaagcgcatggtaaaggtccaaagcttccccaatgtcaaccggata 5335544  T
Q  172 tacaccattaaa 183  Q
     |||||| ||||    
T  5335545 gacaccaataaa 5335556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 5335377 - 5335430
Alignment:
Q  1 ggaagcagtgataatgttaccaacttcagttatgtcttcccgaaccgagtaaag 54  Q
    |||||| ||||| ||||| |||| ||||||||||||||||||| |||| |||||    
T  5335377 ggaagctgtgatgatgtttccaaattcagttatgtcttcccgacccgaataaag 5335430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 72 - 235
Target Start/End: Original strand, 10973784 - 10973947
Alignment:
Q  72 ttttagagtcaacttcaaaatccatattatcaaggtgcatatcactcacctattggagagcatggtaaagacccaatgcttcctctatgttaacaggata 171  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||  || |||| || ||||||||||||||||| |||||||| |||| ||  |||||    
T  10973784 ttttagagtcgacttcaaaatcaatattatcaaggtgcatatcactagcccattgaagcgcatggtaaagacccaaagcttcctcaatgtcaatcggata 10973883  T
Q  172 tacaccattaaaactgattgttctagccaaaacaaagactccaccttcatcacggatgcaaatg 235  Q
     |||||| ||||||| |||||||| |||||||||||||| |||||||| |||||||||||||||    
T  10973884 aacaccaataaaacttattgttctggccaaaacaaagaccccaccttcttcacggatgcaaatg 10973947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 2973587 - 2973951
Alignment:
Q  1 ggaagcagtgataatgttaccaacttcagttatgtcttcccgaaccgagtaaagtgcannnnnnnnngtaattttagagtcaacttcaaaatccatatta 100  Q
    |||||| ||||| ||||| |||| ||||||||||||||||||| |||||||||| |||         ||  |||| ||||| ||||||||||| ||||||    
T  2973587 ggaagccgtgatgatgttgccaaattcagttatgtcttcccgacccgagtaaagagcatctttt---gtggttttggagtcgacttcaaaatcaatatta 2973683  T
Q  101 tcaaggtgcatatcactcacctattggagagcatggtaaagacccaatgcttcctctatgttaacaggatatacaccattaaaactgattgttctagcca 200  Q
    || | || |||||||||| || |||| || ||||||||||  || || |||||  |||||| ||| ||||||||||||   ||  ||| |||||||||||    
T  2973684 tctaagtccatatcactcgcc-attgaagcgcatggtaaatgcctaaagcttcacctatgtcaaccggatatacacca---aaggtgactgttctagcca 2973779  T
Q  201 aaacaaagactccaccttcatcacggatgcaaat------gccggttctgttactgtgactggagaacgccgcctcaatgttgcacttcatgtggccatg 294  Q
    |||||||||||||| |||| ||||||||||||||      ||| ||| |||| |  ||||||||||||||||| |||| |||||| |||||  |||||||    
T  2973780 aaacaaagactccatcttcgtcacggatgcaaatgcctacgcctgttttgttgcgttgactggagaacgccgcatcaacgttgcaattcatacggccatg 2973879  T
Q  295 ctcaggaggatgccactgcagctgggcagcagctggaacatcaattgcagcagcgctaacagcttctggttg 366  Q
    ||| ||||| |||||| || ||||| |||||||||||||| || | ||||||||   ||||||| |||||||    
T  2973880 ctcgggaggctgccaccgcggctggacagcagctggaacagcactagcagcagctggaacagctgctggttg 2973951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 71 - 357
Target Start/End: Complemental strand, 17826652 - 17826356
Alignment:
Q  71 attttagagtcaacttcaaaatccatattatcaaggtgcatatcactcacctattggagagcatggtaaagacccaatgcttcctctatgttaacaggat 170  Q
    ||||||||||| ||||||||||| |||||||||||||||||||| ||   | |||| || ||||||||||| | ||| |||||| | |||| ||| ||||    
T  17826652 attttagagtcgacttcaaaatcaatattatcaaggtgcatatcgcttgtccattgaagcgcatggtaaaggctcaaagcttccccaatgtcaaccggat 17826553  T
Q  171 atacaccat----taaaactgattgttctagccaaaacaaagactccaccttcatcacggatgcaaat------gccggttctgttactgtgactggaga 260  Q
    | ||||||     |||| || | |||||||||||| ||||| |||||  |||| || |||||||||||      ||| ||| |||||| |||||| ||||    
T  17826552 agacaccaagaaataaagctaactgttctagccaacacaaatactccctcttcgtcgcggatgcaaataccaatgcccgttttgttacggtgactagaga 17826453  T
Q  261 acgccgcctcaatgttgcacttcatgtggccatgctcaggaggatgccactgcagctgggcagcagctggaacatcaattgcagcagcgctaacagc 357  Q
    || |||| |||| |||| |||| ||| |||||||||||||||| | |||| || ||||||||||||||||||||||  |||||  ||||||| ||||    
T  17826452 acaccgcatcaacgttgtactttatgcggccatgctcaggaggcttccaccgctgctgggcagcagctggaacatcgcttgcaagagcgctagcagc 17826356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 72 - 309
Target Start/End: Complemental strand, 14230927 - 14230684
Alignment:
Q  72 ttttagagtcaacttcaaaatccatattatcaaggtgcatatcactcacctattggagagcatggtaaagacccaatgcttcctctatgttaacaggata 171  Q
    |||||||||| ||||||| ||| ||  || ||||||||||||| |||  | |||| || ||||||||||| ||||| |||||| | |||| ||| |||||    
T  14230927 ttttagagtcgacttcaatatcaatgataacaaggtgcatatcgctcgtccattgaagcgcatggtaaaggcccaaagcttccccaatgtcaaccggata 14230828  T
Q  172 tacaccattaaaactgattgttctagccaaaacaaagactccaccttcatcacggatgca------aatgccggttctgttactgtgactggagaacgcc 265  Q
     |||||| |||| || |||||||||||||| ||||| ||||| ||||| |||||||||||      ||| || ||| |||||| |||||| || ||||||    
T  14230827 gacaccaataaagctaattgttctagccaacacaaaaactcccccttcgtcacggatgcaaataccaattcccgttttgttacggtgactagaaaacgcc 14230728  T
Q  266 gcctcaatgttgcacttcatgtggccatgctcaggaggatgcca 309  Q
    || |||| ||| ||||||||  | |||||||| ||||| |||||    
T  14230727 gcatcaacgttacacttcatacgaccatgctcgggaggctgcca 14230684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 6e-41; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 72 - 366
Target Start/End: Complemental strand, 12355128 - 12354829
Alignment:
Q  72 ttttagagtcaacttcaaaatccatattatcaaggtgcatatcactcacctattggagagcatggtaaagacccaatgcttcctctatgttaacaggata 171  Q
    |||||||||| ||||||||||| || ||||||||||||||||| ||| || |||| |  ||||||||||| ||||| |||||| | |||| ||| |||||    
T  12355128 ttttagagtcgacttcaaaatcaatgttatcaaggtgcatatcgctcgcccattgaatcgcatggtaaaggcccaaagcttccccaatgtcaaccggata 12355029  T
Q  172 tacaccattaaaactgattgttctagccaaaacaaagactccaccttcatcacggatgca------aatgccggttctgttactgtgactggagaacgcc 265  Q
     |||||| |||| || |||||||||||||| ||||| ||||| ||||| |||||||||||      ||| || ||| | |||| |||||| || ||||||    
T  12355028 gacaccaataaagctaattgttctagccaacacaaaaactcccccttcgtcacggatgcaaataccaattcccgttttattacggtgactagaaaacgcc 12354929  T
Q  266 gcctcaatgttgcacttcatgtggccatgctcaggaggatgccactgcagctgggcagcagctggaacatcaattgcagcagcgctaacagcttctggtt 365  Q
    || |||| ||| ||||||||  |||||||||| ||||| |||||  || ||||| ||||||||||||||||| | |||||| | ||| ||||| ||||||    
T  12354928 gcgtcaacgttacacttcatacggccatgctc-ggaggctgccatcgctgctggacagcagctggaacatcactggcagcaacactagcagctgctggtt 12354830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 72 - 207
Target Start/End: Original strand, 27066970 - 27067105
Alignment:
Q  72 ttttagagtcaacttcaaaatccatattatcaaggtgcatatcactcacctattggagagcatggtaaagacccaatgcttcctctatgttaacaggata 171  Q
    |||||||||| ||||||||||| || ||||||||||||||||  ||| || |||| || ||||||||||| | ||| |||||| | |||| ||| |||||    
T  27066970 ttttagagtcgacttcaaaatcaatgttatcaaggtgcatattgctcgcccattgaagcgcatggtaaaggctcaaagcttccccaatgtcaactggata 27067069  T
Q  172 tacaccattaaaactgattgttctagccaaaacaaa 207  Q
     |||||| |||| || ||||||||| |||| |||||    
T  27067070 gacaccaataaagctaattgttctatccaacacaaa 27067105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 72 - 207
Target Start/End: Original strand, 27087683 - 27087818
Alignment:
Q  72 ttttagagtcaacttcaaaatccatattatcaaggtgcatatcactcacctattggagagcatggtaaagacccaatgcttcctctatgttaacaggata 171  Q
    |||||||||| ||||||||||| || ||||||||||||||||  ||| || |||| || ||||||||||| | ||| |||||| | |||| ||| |||||    
T  27087683 ttttagagtcgacttcaaaatcaatgttatcaaggtgcatattgctcgcccattgaagcgcatggtaaaggctcaaagcttccccaatgtcaactggata 27087782  T
Q  172 tacaccattaaaactgattgttctagccaaaacaaa 207  Q
     |||||| |||| || ||||||||| |||| |||||    
T  27087783 gacaccaataaagctaattgttctatccaacacaaa 27087818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 54027938 - 54028007
Alignment:
Q  72 ttttagagtcaacttcaaaatccatattatcaaggtgcatatcactcacctattggagagcatggtaaag 141  Q
    ||||||||||||| ||| |||| |||||||||||||||||||| ||| || |||| || |||||||||||    
T  54027938 ttttagagtcaacctcacaatcaatattatcaaggtgcatatcgctcgcccattgaagcgcatggtaaag 54028007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 4e-39; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 83 - 334
Target Start/End: Complemental strand, 6949835 - 6949578
Alignment:
Q  83 acttcaaaatccatattatcaaggtgcatatcactcacctattggagagcatggtaaagacccaatgcttcctctatgttaacaggatatacaccattaa 182  Q
    ||||||||||| |||||||| | ||||||||||||| || |||| || ||||||||||| || ||  ||||  || ||| |||||||||||||||| |||    
T  6949835 acttcaaaatcaatattatctaagtgcatatcactcgcccattgaagcgcatggtaaaggcctaaaacttcacctttgtcaacaggatatacaccaataa 6949736  T
Q  183 aactgattgttctagccaaaacaaagactccaccttcatcacggatgcaaat------gccggttctgttactgtgactggagaacgccgcctcaatgtt 276  Q
    |  ||||||||||||||||||||||||||||| |||| ||||||||||||||      ||| ||| |||| |  |||||||||||| |||| |||| |||    
T  6949735 aggtgattgttctagccaaaacaaagactccatcttcgtcacggatgcaaatgcctacgcctgttttgttgcgttgactggagaactccgcatcaacgtt 6949636  T
Q  277 gcacttcatgtggccatgctcaggaggatgccactgcagctgggcagcagctggaaca 334  Q
    ||  |||||   ||||||||| ||||| |||||| || ||||| ||||||||||||||    
T  6949635 gcgtttcatactgccatgctcgggaggctgccaccgcggctggacagcagctggaaca 6949578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 72 - 334
Target Start/End: Complemental strand, 47747468 - 47747200
Alignment:
Q  72 ttttagagtcaacttcaaaatccatattatcaaggtgcatatcactcacctattggagagcatggtaaagacccaatgcttcctctatgttaacaggata 171  Q
    |||| ||||| ||||||||||| | |||||| | ||||||||||||| || |||| |  ||||||||||| || || |||||  |||||| ||  || ||    
T  47747468 ttttggagtcgacttcaaaatcaaaattatctaagtgcatatcactcgcccattgaatcgcatggtaaaggcctaaagcttcacctatgtcaatcgggta 47747369  T
Q  172 tacaccattaaaactgattgttctagccaaaacaaagactccaccttcatcacggatgcaaat------gccggttctgttactgtgactggagaacgcc 265  Q
    |||||||  |||  ||| ||||||||||||||||||||||||| |||  ||||| ||||||||      |||  || ||||||  |||||||| ||||||    
T  47747368 tacaccaacaaaggtgactgttctagccaaaacaaagactccatcttagtcacgaatgcaaatgcctacgcctcttttgttacgttgactggaaaacgcc 47747269  T
Q  266 gcctcaatgttgcacttcatgtggccatgctcaggaggatgccactgcagctgggcagcagctggaaca 334  Q
     | |||| |||||| ||||| ||||||||||| ||||| |||||| || ||||| |||||| |||||||    
T  47747268 acatcaacgttgcatttcatatggccatgctcgggaggctgccaccgcggctggacagcagttggaaca 47747200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 204
Target Start/End: Complemental strand, 47726162 - 47726030
Alignment:
Q  72 ttttagagtcaacttcaaaatccatattatcaaggtgcatatcactcacctattggagagcatggtaaagacccaatgcttcctctatgttaacaggata 171  Q
    |||| ||||| ||||||||||| | |||||| | ||||||||||||| || |||| |  ||||||||||| || || |||||  |||||| ||  || ||    
T  47726162 ttttggagtcgacttcaaaatcaaaattatctaagtgcatatcactcgcccattgaatcgcatggtaaaggcctaaagcttcacctatgtcaatcgggta 47726063  T
Q  172 tacaccattaaaactgattgttctagccaaaac 204  Q
    |||||||  |||  ||| |||||||||||||||    
T  47726062 tacaccaacaaaggtgactgttctagccaaaac 47726030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1964 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: scaffold1964
Description:

Target: scaffold1964; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 3 - 334
Target Start/End: Complemental strand, 1082 - 749
Alignment:
Q  3 aagcagtgataatgttaccaacttcagttatgtcttcccgaaccgagtaaagtgcannnnnnnnngtaattttagagtcaacttcaaaatccatattatc 102  Q
    |||| ||||||||||| |||| ||||||||||||||||||| |||||||||| ||          ||  |||| ||||| ||||||||||| ||||||||    
T  1082 aagccgtgataatgttgccaaattcagttatgtcttcccgacccgagtaaagagc---gtcttttgtggttttggagtcgacttcaaaatcaatattatc 986  T
Q  103 aaggtgcatatcactcacctattggagagcatggtaaagacccaatgcttcctctatgttaacaggatatacaccattaaaactgattgttctagccaaa 202  Q
     | ||||||||||||| || |||| || ||||||||||| |  || |||||  |||||| ||| ||||||||| || | ||  ||| |||||||||||||    
T  985 taagtgcatatcactcgccgattgaagcgcatggtaaaggcttaaagcttcacctatgtcaaccggatatacatcaat-aaggtgactgttctagccaaa 887  T
Q  203 acaaagactccaccttcatcacggatgcaaat------gccggttctgttactgtgactggagaacgccgcctcaatgttgcacttcatgtggccatgct 296  Q
    |||||||||||| |||| ||| | ||| ||||      ||| ||| ||||||  ||||||||||||||||| |||| |||||| |||||  |||||| ||    
T  886 acaaagactccatcttcgtcaagaatgaaaatgccaacgcctgttttgttaccttgactggagaacgccgcatcaacgttgcatttcatacggccatcct 787  T
Q  297 caggaggatgccactgcagctgggcagcagctggaaca 334  Q
      ||||| |||||| || ||||| ||||||||||||||    
T  786 tgggaggctgccaccgcggctggacagcagctggaaca 749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1964; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 366
Target Start/End: Complemental strand, 742 - 696
Alignment:
Q  320 gcagcagctggaacatcaattgcagcagcgctaacagcttctggttg 366  Q
    |||||||||||||||||| | ||||||||||||||| || |||||||    
T  742 gcagcagctggaacatcactagcagcagcgctaacaactgctggttg 696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 72 - 234
Target Start/End: Original strand, 30141174 - 30141336
Alignment:
Q  72 ttttagagtcaacttcaaaatccatattatcaaggtgcatatcactcacctattggagagcatggtaaagacccaatgcttcctctatgttaacaggata 171  Q
    |||||||||| |||| |||||| || ||||||||||||||||| ||| || |||| || ||||||||||| ||||| |||||| | |||| ||| |||||    
T  30141174 ttttagagtcgactttaaaatcaatgttatcaaggtgcatatcgctcgcccattgaagcgcatggtaaaggcccaaagcttccccaatgtcaaccggata 30141273  T
Q  172 tacaccattaaaactgattgttctagccaaaacaaagactccaccttcatcacggatgcaaat 234  Q
     |||||| ||||||| |||||||||||||| || || ||||  ||||| ||||||||||||||    
T  30141274 gacaccaataaaactaattgttctagccaacacgaaaactctcccttcgtcacggatgcaaat 30141336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0643 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0643
Description:

Target: scaffold0643; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 72 - 154
Target Start/End: Complemental strand, 951 - 869
Alignment:
Q  72 ttttagagtcaacttcaaaatccatattatcaaggtgcatatcactcacctattggagagcatggtaaagacccaatgcttcc 154  Q
    |||||||||| ||||||||||| |||||||||||||||||||| ||| || |||| || ||||||||||| ||||| ||||||    
T  951 ttttagagtcgacttcaaaatcaatattatcaaggtgcatatcgctcgcccattgaagcgcatggtaaagtcccaaagcttcc 869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 27810377 - 27810332
Alignment:
Q  74 ttagagtcaacttcaaaatccatattatcaaggtgcatatcactca 119  Q
    |||||||||||||||||||| ||||| ||||  |||||||||||||    
T  27810377 ttagagtcaacttcaaaatcaatattgtcaaactgcatatcactca 27810332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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