View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_high_59 (Length: 419)
Name: NF11745_high_59
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_high_59 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 57 - 419
Target Start/End: Complemental strand, 28244843 - 28244480
Alignment:
| Q |
57 |
tcaatattgtccggtggtaaacatgtattattgatgtccttcgatcaatgtgttgaaaaataaatacaatatcttaaaggagggggaagaattgaaacat |
156 |
Q |
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| T |
28244843 |
tcaatattgtccagtggtaaacatgtattattgatgtccttcgatcaatgtgttgaaaaataaatacaatatcttaaaggagggggaagaattgaaacat |
28244744 |
T |
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| Q |
157 |
ttacataactgcaatcatggaccatgtcaactatgactttccaatacatttcgaatttgatcggcttcaaattcaaaaattgggaaatttttattccaat |
256 |
Q |
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| T |
28244743 |
ttacataactgcaatcatggaccatgtcagctatgactttccaatacatttcgaatttgatcggcttcaaattcaaaaattgggaaatttttattccaat |
28244644 |
T |
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| Q |
257 |
tcttatggtccaaaacacaactcaaataacattattagatcaaattaattctggtgtagaatcattggatgaggttgtcctgcattggttttatgacaac |
356 |
Q |
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| T |
28244643 |
tcttatggtccaaaacacaactcaaataacattattagatgaaattaattctgctgtagaatcattggataaggttgtcctgcattgattttatgaccac |
28244544 |
T |
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| Q |
357 |
cac-gggtgaaggaggagtattattttttaataatacttagagaaatgatatttgaacatctat |
419 |
Q |
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| T |
28244543 |
cacggggtgaaagaggagtattattttttaataatatttagagaaatgaaatttgaacatctat |
28244480 |
T |
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