View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11745_high_6 (Length: 686)

Name: NF11745_high_6
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11745_high_6
NF11745_high_6
[»] chr3 (14 HSPs)
chr3 (6-673)||(1717419-1718086)
chr3 (6-254)||(1738916-1739164)
chr3 (512-673)||(1739395-1739556)
chr3 (6-218)||(1754087-1754300)
chr3 (530-673)||(1754877-1755020)
chr3 (522-673)||(1749254-1749405)
chr3 (6-167)||(1748771-1748932)
chr3 (334-415)||(46893416-46893497)
chr3 (361-415)||(13639459-13639513)
chr3 (334-486)||(54186928-54187080)
chr3 (334-415)||(29235677-29235758)
chr3 (347-415)||(48543213-48543281)
chr3 (346-415)||(20909363-20909432)
chr3 (383-415)||(54140812-54140844)
[»] chr8 (6 HSPs)
chr8 (334-416)||(30085447-30085529)
chr8 (334-415)||(33440574-33440655)
chr8 (334-415)||(28700583-28700664)
chr8 (337-415)||(6580862-6580939)
chr8 (363-413)||(31703822-31703872)
chr8 (334-398)||(16895271-16895335)
[»] chr4 (5 HSPs)
chr4 (331-416)||(51475233-51475318)
chr4 (347-415)||(31699549-31699617)
chr4 (351-415)||(37306476-37306540)
chr4 (339-416)||(6540258-6540335)
chr4 (361-415)||(43480299-43480353)
[»] scaffold0922 (1 HSPs)
scaffold0922 (348-415)||(709-776)
[»] chr5 (7 HSPs)
chr5 (331-415)||(41020248-41020332)
chr5 (353-415)||(42958487-42958549)
chr5 (347-415)||(5990589-5990657)
chr5 (347-415)||(18237206-18237274)
chr5 (347-415)||(30892150-30892218)
chr5 (347-415)||(32153763-32153831)
chr5 (360-432)||(34320913-34320985)
[»] chr1 (5 HSPs)
chr1 (360-415)||(932035-932090)
chr1 (334-407)||(11709656-11709729)
chr1 (334-415)||(19078941-19079022)
chr1 (334-415)||(19126829-19126910)
chr1 (347-413)||(14562603-14562669)
[»] chr7 (4 HSPs)
chr7 (334-416)||(17878710-17878792)
chr7 (347-415)||(557447-557515)
chr7 (360-416)||(47822035-47822091)
chr7 (334-415)||(43930030-43930110)
[»] chr2 (5 HSPs)
chr2 (347-413)||(5140042-5140108)
chr2 (331-407)||(864178-864254)
chr2 (347-415)||(6951739-6951808)
chr2 (336-429)||(16011989-16012082)
chr2 (347-415)||(37285185-37285253)
[»] chr6 (2 HSPs)
chr6 (334-415)||(7447636-7447716)
chr6 (334-414)||(32439506-32439586)


Alignment Details
Target: chr3 (Bit Score: 547; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 6 - 673
Target Start/End: Original strand, 1717419 - 1718086
Alignment:
Q  6 gagagaagaactttagaatctgtggccaatggatttgacatgatcacataagtatttgggatgtatttcctcacaacatcataagcttccctgtaatagt 105  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1717419 gagagaagaagtttagaatctgtggccaatggatttgacatgatcacataagtatttgggatgtatttcctcacaacatcataagcttccctgtaatagt 1717518  T
Q  106 tcttcaggctatctagattgacacctagtggcttattcatcagctctattcctcctaaactttttctatgactgtatctgtaaacaagttcaattcatgt 205  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1717519 tcttcaagctatctagattgacacctagtggctcattcatcagctctattcctcctaaactttttctatgactgtatctgtaaacaagttcaattcatgt 1717618  T
Q  206 ataaagaaatcagcttcgagtaggtaattcaattggttaacaaagttttaaataaggagagtgaatcttagagaaagttctagtaagagtgttcctagca 305  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  1717619 ataaagaaatcagtttcgagtaggtaattcatttggttaacaaagttttaaataaggagagtgaatcttagagaaagtgccagtaagagtgttcctagca 1717718  T
Q  306 ttctgtctaaggaggaatgccatgtacactctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataa 405  Q
    |||||||||||||| ||||| ||||||| |||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1717719 ttctgtctaaggagaaatgctatgtacattctctaacgtccactttcttatttagtgaaattcatgtggatatcaaatattggaaatggatcatacataa 1717818  T
Q  406 agtggtgagatttatatggatttcatctaatacgagggtaaatgttnnnnnnngtgttagtaagagagtgttcttaacattctgtttcaggaatatatga 505  Q
    |||||||||||  |||| |||||||||||||||||| || | ||||       || ||||||||||||||||||||||||||||  | ||||||||||||    
T  1717819 agtggtgagatccatatagatttcatctaatacgagagtgagtgttagaaaaagtattagtaagagagtgttcttaacattctgcctgaggaatatatga 1717918  T
Q  506 ataaattttagatatatagatacaaaacctttttgctaagaattctatgacagagactgtctgaggaatgtatgaataaccccattctgtatatccatct 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1717919 ataaattttagatatatagatacaaaacctttttgctaagaattctatgacagagactgtctgaggaatgtatgaataaccccattctgtatatccatct 1718018  T
Q  606 cttgtcccactatgctcaagaccattttgagaaccttcaactgcatgcaaatccacaatcactttcat 673  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1718019 cttgtcccactatgctcaaaaccattttgagaaccttcaactgcatgcaaatccacaatcactttcat 1718086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 6 - 254
Target Start/End: Original strand, 1738916 - 1739164
Alignment:
Q  6 gagagaagaactttagaatctgtggccaatggatttgacatgatcacataagtatttgggatgtatttcctcacaacatcataagcttccctgtaatagt 105  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||    
T  1738916 gagagaagaagtttggaatctgtggccaatgggtttgacatgatcacataagtatttgggatgtatttcctcacaacatcataagctaacttgtaatagt 1739015  T
Q  106 tcttcaggctatctagattgacacctagtggcttattcatcagctctattcctcctaaactttttctatgactgtatctgtaaacaagttcaattcatgt 205  Q
    |||| ||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||    
T  1739016 tcttgaggctatcttgattgacaccaagtggctcattcatcagctctattcctcctaaactttttctattattatatctgtaaacaagttcaattcatgt 1739115  T
Q  206 ataaagaaatcagcttcgagtaggtaattcaattggttaacaaagtttt 254  Q
    ||||||| ||||| ||||||||||||||||| ||||| ||| |||||||    
T  1739116 ataaagatatcagtttcgagtaggtaattcatttggtgaactaagtttt 1739164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 512 - 673
Target Start/End: Original strand, 1739395 - 1739556
Alignment:
Q  512 tttagatatatagatacaaaacctttttgctaagaattctatgacagagactgtctgaggaatgtatgaataaccccattctgtatatccatctcttgtc 611  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||    
T  1739395 tttagatatatagatacataacctttttgctaagaactctatgacagagactgtctgtggaatgtatgaatcatcccattctgtatatccatctcttgtc 1739494  T
Q  612 ccactatgctcaagaccattttgagaaccttcaactgcatgcaaatccacaatcactttcat 673  Q
    ||||||||||||| ||||||||||||||||||||  |||||||| |||||||||||||||||    
T  1739495 ccactatgctcaaaaccattttgagaaccttcaatggcatgcaagtccacaatcactttcat 1739556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 6 - 218
Target Start/End: Original strand, 1754087 - 1754300
Alignment:
Q  6 gagagaagaactttagaatctgtggccaatggatttgacatgatcacataagtatttgggatgtatttcctcacaacatcataagcttccctgtaatagt 105  Q
    |||||||| |||||||||||||   ||||||| |||||||| |||||||||| ||||||  |||||||||||||  |||||||||| ||| ||||||| |    
T  1754087 gagagaagtactttagaatctgcatccaatgggtttgacattatcacataagcatttggattgtatttcctcactgcatcataagcctccttgtaatatt 1754186  T
Q  106 tcttcaggctatctagattgacacctagtggcttattcatcagctctattcctcctaaactttttctatgactgtatctgtaaacaagttcaattcatgt 205  Q
    |||| ||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||  ||||| ||  || ||||  |||| ||||||||| ||    
T  1754187 tcttgaggctatctagattgacaccttgtggctcattcatcaactctattcctcctaaacttggtctattaccatacctgtccacaaattcaattcaagt 1754286  T
Q  206 at-aaagaaatcag 218  Q
    || |||||||||||    
T  1754287 atcaaagaaatcag 1754300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 530 - 673
Target Start/End: Original strand, 1754877 - 1755020
Alignment:
Q  530 aaacctttttgctaagaattctatgacagagactgtctgaggaatgtatgaataaccccattctgtatatccatctcttgtcccactatgctcaagacca 629  Q
    |||||||||||||| ||| ||||||||||||||||||||||| |||||||| | |||||||||| || ||||||||||||| ||||| || |||  ||||    
T  1754877 aaacctttttgctaggaaatctatgacagagactgtctgaggtatgtatgattcaccccattctataaatccatctcttgttccactgtgatcattacca 1754976  T
Q  630 ttttgagaaccttcaactgcatgcaaatccacaatcactttcat 673  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  1754977 ttttgagaaccttcaactgcatgcaagtccacaatcactttcat 1755020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 522 - 673
Target Start/End: Original strand, 1749254 - 1749405
Alignment:
Q  522 tagatacaaaacctttttgctaagaattctatgacagagactgtctgaggaatgtatgaataaccccattctgtatatccatctcttgtcccactatgct 621  Q
    |||||||||||||||| ||||||||| || || ||||  ||||||||||| ||||| |||| ||||||||||||||||||||||||||| |||||||| |    
T  1749254 tagatacaaaacctttgtgctaagaaatcaatcacagctactgtctgaggtatgtaagaatcaccccattctgtatatccatctcttgttccactatgtt 1749353  T
Q  622 caagaccattttgagaaccttcaactgcatgcaaatccacaatcactttcat 673  Q
    ||   |||||||||||||||||||| ||||||||||| ||||||||||||||    
T  1749354 cattgccattttgagaaccttcaacagcatgcaaatctacaatcactttcat 1749405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 6 - 167
Target Start/End: Original strand, 1748771 - 1748932
Alignment:
Q  6 gagagaagaactttagaatctgtggccaatggatttgacatgatcacataagtatttgggatgtatttcctcacaacatcataagcttccctgtaatagt 105  Q
    ||||||||| |||||||||||    |||||||||||||||||||||||||||  | |||| ||||||| |||||| ||||||||||| || ||||||| |    
T  1748771 gagagaagagctttagaatctccatccaatggatttgacatgatcacataagcctctgggttgtattttctcacagcatcataagctgccttgtaatact 1748870  T
Q  106 tcttcaggctatctagattgacacctagtggcttattcatcagctctattcctcctaaactt 167  Q
    |||| || ||||| |||||||||||| |||||| ||||||||||||||||||||||||||||    
T  1748871 tcttgagactatcaagattgacaccttgtggctcattcatcagctctattcctcctaaactt 1748932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 334 - 415
Target Start/End: Complemental strand, 46893497 - 46893416
Alignment:
Q  334 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 415  Q
    ||||||||||   ||||||||||| | |||||||||||||| || || | |||||||||||||| |||||||||||||||||    
T  46893497 ctctctaacactcactctcttattaaatgaaattcatgtgggtaacacacattggaaatggatcccacataaagtggtgaga 46893416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 361 - 415
Target Start/End: Original strand, 13639459 - 13639513
Alignment:
Q  361 tgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 415  Q
    |||||||||||||| ||||| | |||||||||||||| |||||||||||||||||    
T  13639459 tgaaattcatgtgggtatcacacattggaaatggatctcacataaagtggtgaga 13639513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 334 - 486
Target Start/End: Complemental strand, 54187080 - 54186928
Alignment:
Q  334 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgagatttatatggatttcatct 433  Q
    ||||||||||   |||||||||||  ||||| ||||||||| || || | ||| |||||||||| |||||||| |||||||||| | |||  ||||| |     
T  54187080 ctctctaacactcactctcttattgggtgaagttcatgtgggtaccacacattagaaatggatcccacataaaatggtgagattcacatgagtttcaccc 54186981  T
Q  434 aatacgagggtaaatgttnnnnnnngtgttagtaagagagtgttcttaacatt 486  Q
    |||| ||| || ||||||       ||||||| ||||||||||||||| ||||    
T  54186980 aataggagagtgaatgttagagagagtgttagaaagagagtgttcttagcatt 54186928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 334 - 415
Target Start/End: Original strand, 29235677 - 29235758
Alignment:
Q  334 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 415  Q
    ||||||||||   |||||||||||  |||||||||||| ||||| || | ||| ||||||||||  ||||||||||||||||    
T  29235677 ctctctaacactcactctcttattgggtgaaattcatgaggataccacacattagaaatggatccaacataaagtggtgaga 29235758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 347 - 415
Target Start/End: Complemental strand, 48543281 - 48543213
Alignment:
Q  347 actctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 415  Q
    |||||||||||  ||||||||||||||| || || | |||||||||||| | |||||||| ||||||||    
T  48543281 actctcttattgggtgaaattcatgtgggtagcatacattggaaatggaccccacataaaatggtgaga 48543213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 415
Target Start/End: Complemental strand, 20909432 - 20909363
Alignment:
Q  346 tactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 415  Q
    ||||||||||||  |||||||||| ||||  | ||  ||||| ||||||||| |||||||||||||||||    
T  20909432 tactctcttattgggtgaaattcaggtgggcaccacctattgaaaatggatcccacataaagtggtgaga 20909363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 383 - 415
Target Start/End: Original strand, 54140812 - 54140844
Alignment:
Q  383 tattggaaatggatcacacataaagtggtgaga 415  Q
    ||||||||||||||| |||||||||||||||||    
T  54140812 tattggaaatggatcccacataaagtggtgaga 54140844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 334 - 416
Target Start/End: Complemental strand, 30085529 - 30085447
Alignment:
Q  334 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgagat 416  Q
    ||||||||||  |||||||||||| |||||||||||||||  | ||| || ||||||||||||| ||||||||||||||||||    
T  30085529 ctctctaacacttactctcttattgagtgaaattcatgtgagtgtcacatgttggaaatggatcccacataaagtggtgagat 30085447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 334 - 415
Target Start/End: Complemental strand, 33440655 - 33440574
Alignment:
Q  334 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 415  Q
    |||||||||||  |||||||||||  |||||| |||||||| || || | |||||||||||||| |||||||||||||||||    
T  33440655 ctctctaacattcactctcttattgggtgaaagtcatgtgggtaccacacattggaaatggatcccacataaagtggtgaga 33440574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 334 - 415
Target Start/End: Original strand, 28700583 - 28700664
Alignment:
Q  334 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 415  Q
    ||||||||||   |||||||||||  || ||||| |||||| || || |||||||||||| ||| |||||||||||||||||    
T  28700583 ctctctaacactcactctcttattgggttaaatttatgtgggtaccacatattggaaatgaatcccacataaagtggtgaga 28700664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 337 - 415
Target Start/End: Original strand, 6580862 - 6580939
Alignment:
Q  337 tctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 415  Q
    ||||||||  || ||||||||  ||||||||||||||| || || | ||||||||| |||| |||||||||||||||||    
T  6580862 tctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattggaaat-gatcccacataaagtggtgaga 6580939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 363 - 413
Target Start/End: Complemental strand, 31703872 - 31703822
Alignment:
Q  363 aaattcatgtggatatcaaatattggaaatggatcacacataaagtggtga 413  Q
    ||||| |||||||||||| |  ||||||||||||| |||||||||||||||    
T  31703872 aaattaatgtggatatcacactttggaaatggatcccacataaagtggtga 31703822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 334 - 398
Target Start/End: Original strand, 16895271 - 16895335
Alignment:
Q  334 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatca 398  Q
    ||||||||||   ||||||||||| | | ||||||||||||||| || |||||| ||||||||||    
T  16895271 ctctctaacactcactctcttattgaatcaaattcatgtggataccacatattgaaaatggatca 16895335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 7e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 331 - 416
Target Start/End: Complemental strand, 51475318 - 51475233
Alignment:
Q  331 acactctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgagat 416  Q
    ||||||||||||| | |||||||||||  ||||||| ||||||| || || | |||||||||||||| ||||||||||||||||||    
T  51475318 acactctctaacacccactctcttattgggtgaaatccatgtgggtaccacacattggaaatggatcccacataaagtggtgagat 51475233  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 347 - 415
Target Start/End: Complemental strand, 31699617 - 31699549
Alignment:
Q  347 actctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 415  Q
    |||||||||||  ||||||||||||||| ||||| | |||||||||||| | |||||||| ||||||||    
T  31699617 actctcttattgggtgaaattcatgtgggtatcatacattggaaatggaccccacataaaatggtgaga 31699549  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 351 - 415
Target Start/End: Complemental strand, 37306540 - 37306476
Alignment:
Q  351 tcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 415  Q
    |||||||  ||||||||||||||| || || | |||||||||||||| |||||||||||||||||    
T  37306540 tcttattgggtgaaattcatgtgggtaccacacattggaaatggatctcacataaagtggtgaga 37306476  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 339 - 416
Target Start/End: Original strand, 6540258 - 6540335
Alignment:
Q  339 taacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgagat 416  Q
    ||||||| |||||||||||  |||||||  |||||| ||||| | ||||||||||||||  ||| |||||||||||||    
T  6540258 taacatccactctcttattgggtgaaatcaatgtggttatcatacattggaaatggatcctacacaaagtggtgagat 6540335  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 361 - 415
Target Start/End: Original strand, 43480299 - 43480353
Alignment:
Q  361 tgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 415  Q
    |||||||||||||| || || | |||| ||||||||| |||||||||||||||||    
T  43480299 tgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgaga 43480353  T

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Target: scaffold0922 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 348 - 415
Target Start/End: Original strand, 709 - 776
Alignment:
Q  348 ctctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 415  Q
    |||||||||| ||||||||||||||||||| || | |||| ||||||||| |||||||||||||||||    
T  709 ctctcttattgagtgaaattcatgtggataccacacattgaaaatggatcccacataaagtggtgaga 776  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 331 - 415
Target Start/End: Complemental strand, 41020332 - 41020248
Alignment:
Q  331 acactctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 415  Q
    ||||||||||||| | |||||||||||  |||||||  |||||| || || |||||||||||| ||| |||||||||||||||||    
T  41020332 acactctctaacacccactctcttattgggtgaaatatatgtgggtaccacatattggaaatgaatcccacataaagtggtgaga 41020248  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 353 - 415
Target Start/End: Original strand, 42958487 - 42958549
Alignment:
Q  353 ttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 415  Q
    |||||| ||||||||||||||| || ||   |||||||||||||| |||||||||||||||||    
T  42958487 ttatttggtgaaattcatgtgggtaccacgcattggaaatggatcccacataaagtggtgaga 42958549  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 347 - 415
Target Start/End: Complemental strand, 5990657 - 5990589
Alignment:
Q  347 actctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 415  Q
    ||||| |||||  ||||||||||||||| || || | |||||||||||||| |||||||| ||||||||    
T  5990657 actcttttattgggtgaaattcatgtgggtaccatacattggaaatggatcccacataaaatggtgaga 5990589  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 347 - 415
Target Start/End: Complemental strand, 18237274 - 18237206
Alignment:
Q  347 actctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 415  Q
    ||||| |||||  ||||||||||||||| ||||| | |||| |||| |||| |||||||||||||||||    
T  18237274 actcttttattgggtgaaattcatgtgggtatcacacattgaaaatagatcccacataaagtggtgaga 18237206  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 347 - 415
Target Start/End: Original strand, 30892150 - 30892218
Alignment:
Q  347 actctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 415  Q
    |||||||||||  ||||| ||||||||| || || | ||| |||||||||| |||||||| ||||||||    
T  30892150 actctcttattcggtgaagttcatgtgggtaccacacattagaaatggatcccacataaaatggtgaga 30892218  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 347 - 415
Target Start/End: Complemental strand, 32153831 - 32153763
Alignment:
Q  347 actctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 415  Q
    |||||||||||  ||||||  |||||||||  || |  ||||||||||||| |||||||||||||||||    
T  32153831 actctcttattgggtgaaacccatgtggatcccacactttggaaatggatcccacataaagtggtgaga 32153763  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 360 - 432
Target Start/End: Complemental strand, 34320985 - 34320913
Alignment:
Q  360 gtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgagatttatatggatttcatc 432  Q
    ||||||| |||||||||| || |  ||| |||| |||| ||||||||||||||||| | | ||||||||||||    
T  34320985 gtgaaatccatgtggataccatactttgaaaatagatcccacataaagtggtgagactcacatggatttcatc 34320913  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 360 - 415
Target Start/End: Original strand, 932035 - 932090
Alignment:
Q  360 gtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 415  Q
    |||||||||||||||||| || | |||||||||||||| |||||||||||||||||    
T  932035 gtgaaattcatgtggataccacacattggaaatggatcccacataaagtggtgaga 932090  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 334 - 407
Target Start/End: Complemental strand, 11709729 - 11709656
Alignment:
Q  334 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaag 407  Q
    ||||||||||   ||||||||||| |||||||||||||||| || || | |||||||||||||| |||||||||    
T  11709729 ctctctaacactcactctcttattgagtgaaattcatgtgggtaccacacattggaaatggatcccacataaag 11709656  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 334 - 415
Target Start/End: Original strand, 19078941 - 19079022
Alignment:
Q  334 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 415  Q
    ||||||||||   |||||||||||  |||||| ||||| || || || | |||||||||||||| |||||||||||||||||    
T  19078941 ctctctaacactcactctcttattgggtgaaagtcatgcgggtaccacacattggaaatggatcccacataaagtggtgaga 19079022  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 334 - 415
Target Start/End: Original strand, 19126829 - 19126910
Alignment:
Q  334 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 415  Q
    ||||||||||   |||||||||||  |||||| ||||| || || || | |||||||||||||| |||||||||||||||||    
T  19126829 ctctctaacactcactctcttattgggtgaaagtcatgcgggtaccacacattggaaatggatcccacataaagtggtgaga 19126910  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 347 - 413
Target Start/End: Complemental strand, 14562669 - 14562603
Alignment:
Q  347 actctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtga 413  Q
    ||||||||||| ||||||||| |||| | || || |  ||||||||||||| |||||||||||||||    
T  14562669 actctcttattgagtgaaatttatgtaggtaccacactttggaaatggatcccacataaagtggtga 14562603  T

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Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 334 - 416
Target Start/End: Original strand, 17878710 - 17878792
Alignment:
Q  334 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgagat 416  Q
    |||| |||||| ||||||||||||  |||||| |||||||| ||||| | ||| ||||| |||| ||||||||||||||||||    
T  17878710 ctctttaacatttactctcttattgggtgaaagtcatgtgggtatcacacattagaaatagatcccacataaagtggtgagat 17878792  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 347 - 415
Target Start/End: Complemental strand, 557515 - 557447
Alignment:
Q  347 actctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 415  Q
    |||||||||||   |||||||||||||| ||||| | |||  ||||||||| |||||||||||||||||    
T  557515 actctcttattggatgaaattcatgtgggtatcacacattaaaaatggatcccacataaagtggtgaga 557447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 416
Target Start/End: Original strand, 47822035 - 47822091
Alignment:
Q  360 gtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgagat 416  Q
    ||||||| ||||||| || || | |||||||||||||| ||||||||||||||||||    
T  47822035 gtgaaatccatgtgggtaccacacattggaaatggatcccacataaagtggtgagat 47822091  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 415
Target Start/End: Complemental strand, 43930110 - 43930030
Alignment:
Q  334 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 415  Q
    ||||||||||   ||||| |||||  ||||||||||||||| || || | |||| |||||||||||| ||||||||||||||    
T  43930110 ctctctaacactcactcttttattgggtgaaattcatgtgggtaccacacattgaaaatggatcaca-ataaagtggtgaga 43930030  T

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Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 347 - 413
Target Start/End: Complemental strand, 5140108 - 5140042
Alignment:
Q  347 actctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtga 413  Q
    ||||||||||| |||||||||||||||| || || | |||| ||||||||| |||||||||||||||    
T  5140108 actctcttattgagtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtga 5140042  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 331 - 407
Target Start/End: Complemental strand, 864254 - 864178
Alignment:
Q  331 acactctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaag 407  Q
    |||||||||||||   |||||||||||  ||||||||||||||| || || | ||| |||||||||| |||||||||    
T  864254 acactctctaacactcactctcttattgggtgaaattcatgtgggtaccacacattagaaatggatcccacataaag 864178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 415
Target Start/End: Original strand, 6951739 - 6951808
Alignment:
Q  347 actctcttatttagtgaaa-ttcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 415  Q
    ||||||||||| ||||||| ||||||||| |  || | |||| ||||||||| |||||||||||||||||    
T  6951739 actctcttattgagtgaaaattcatgtgggtgccacacattgaaaatggatcccacataaagtggtgaga 6951808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 429
Target Start/End: Complemental strand, 16012082 - 16011989
Alignment:
Q  336 ctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgagatttatatggatttc 429  Q
    |||||||| ||||| ||||||| | | |||| ||||||||||  | || |||||||| ||| | |||||||||||||||||  |||| ||||||    
T  16012082 ctctaacacctactttcttattgaataaaatacatgtggatactacattttggaaatagattaaacataaagtggtgagatccatatagatttc 16011989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 347 - 415
Target Start/End: Complemental strand, 37285253 - 37285185
Alignment:
Q  347 actctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 415  Q
    ||||| |||||  ||||||||||||||| || || | |||||||||||||| ||| ||||||| |||||    
T  37285253 actcttttattgggtgaaattcatgtgggtaccacacattggaaatggatctcacgtaaagtgatgaga 37285185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 334 - 415
Target Start/End: Complemental strand, 7447716 - 7447636
Alignment:
Q  334 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 415  Q
    |||||||||||| |||||||| ||  ||||||||||||||| || || | ||| |||||||||| |||||||||||||||||    
T  7447716 ctctctaacatc-actctcttgttgggtgaaattcatgtgggtaccacacattagaaatggatcccacataaagtggtgaga 7447636  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 334 - 414
Target Start/End: Original strand, 32439506 - 32439586
Alignment:
Q  334 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgag 414  Q
    ||||||||||   |||||||||||  ||||||||||||||| || || | |||||||||||||| ||||||||| ||||||    
T  32439506 ctctctaacactcactctcttattgggtgaaattcatgtgggtaccacacattggaaatggatcccacataaagcggtgag 32439586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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