View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_high_63 (Length: 404)
Name: NF11745_high_63
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_high_63 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 335
Target Start/End: Original strand, 37708086 - 37708404
Alignment:
| Q |
17 |
acaaaagaattatttattcatacatatatgatcaataacagtgtataaaattgtcctgccaacataatttagttggaatggatattgcattatatttgtt |
116 |
Q |
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| T |
37708086 |
acaaaataattatttattcatacataaatgatcgataacagtgtataaaatggtcctgcgaacataattcagttggaagagatattgcattatatttgtt |
37708185 |
T |
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| Q |
117 |
gggattggaggttcgaaacttggattctccatttattcaccttaaaagcatggaatactagccactagactacttaacaaaagaaaacgtgtataaaacc |
216 |
Q |
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| T |
37708186 |
gggactggaggttcgaaacttgaattctccatttattcaccttaaaagtatggaatactagccactagactacttaacaaaagaaaaagtgtataaaacc |
37708285 |
T |
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| Q |
217 |
ttctttaatttttagcaaactatttagactagactcactccatcnnnnnnnnaggacaatcactccatctcttaaaaaagttaatgtagacgagtaaatg |
316 |
Q |
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| T |
37708286 |
ttctttaatttttagcaaactatttagactagactcactccatgttttttttaggacaatcactccatctcttaaaaaagaaaatgtagacgagttaatg |
37708385 |
T |
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| Q |
317 |
aaattgtgatatagtatag |
335 |
Q |
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| T |
37708386 |
aaattgtgatatagtatag |
37708404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 331 - 392
Target Start/End: Original strand, 37708582 - 37708644
Alignment:
| Q |
331 |
tatagttcttagttaa-gacaaaatttccgatttgcagttctttttatggaggctatatatct |
392 |
Q |
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| T |
37708582 |
tatagtttttagttaaagacaaaatttccgatttgcagttctttttatggaggctatatatct |
37708644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 16119350 - 16119407
Alignment:
| Q |
147 |
atttattcaccttaaaagcatg-gaatactagccactagactacttaacaaaagaaaa |
203 |
Q |
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| T |
16119350 |
atttattcaccttaaaaaaatgtgaattctagccactagactacttgacaaaaaaaaa |
16119407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 203
Target Start/End: Original strand, 10629465 - 10629493
Alignment:
| Q |
175 |
tagccactagactacttaacaaaagaaaa |
203 |
Q |
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| T |
10629465 |
tagccactagactacttaacaaaagaaaa |
10629493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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