View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_high_67 (Length: 397)
Name: NF11745_high_67
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_high_67 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 384
Target Start/End: Complemental strand, 26216967 - 26216601
Alignment:
| Q |
18 |
agttattcggttagccttctttctagttgtagctgcaacatgaaagaatttgttgtttaatctccatccttataccataatgcttttgctcgttgtcgcc |
117 |
Q |
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| T |
26216967 |
agttattcggttagccttctttctagttgtagctgcaacatgaaagaatttgttgtttaatctccatccttataccataatgcttttgctcgttgtcgcc |
26216868 |
T |
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| Q |
118 |
agaaaatctcgtctttcttaagtagagttaagagtcttttattcaaattattgaattggtggatgttagaaacatcaactgccgcttgtgttgtttttaa |
217 |
Q |
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| T |
26216867 |
agaaaatctcgtttttcttaagtagagttaagagtcttttattcaaattattgaattggtggatgttagaatcatcaaccgccgcttgtgttgtttttaa |
26216768 |
T |
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| Q |
218 |
tttttatggcagtcattagtttacttacaggggttttgaaaattttggtttctccaattgatcatatcagaagcacacatgccaagatgatcaacaatat |
317 |
Q |
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| T |
26216767 |
tttttatggcagtcattagtttacttacaggggttttgaaaattttggtttctccaattgatcatatcagaagcacacatgccaagctgatcaacaatat |
26216668 |
T |
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| Q |
318 |
taactccattttagatatgccaacattgactcaaaatcctcaaagcctggttcttccaacaaagcat |
384 |
Q |
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| T |
26216667 |
taactccatttgagatatgccaacattgactcaaaatcctcaaagcctggttctgccaacaaagcat |
26216601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 16322611 - 16322575
Alignment:
| Q |
32 |
ccttctttctagttgtagctgcaacatgaaagaattt |
68 |
Q |
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|||||||||||| | |||||||||||||||||||||| |
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| T |
16322611 |
ccttctttctagatatagctgcaacatgaaagaattt |
16322575 |
T |
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