View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11745_high_7 (Length: 684)
Name: NF11745_high_7
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_high_7 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 219 - 672
Target Start/End: Complemental strand, 1665069 - 1664616
Alignment:
| Q |
219 |
gtaaatgatacttaatcttgtgaatcacatgatttttaaattttgatctacaaagttccaaaattgcggtggtccacgatcgataaaaataaccgaagtc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1665069 |
gtaaatgatacttaatcttgtgaatcacatgatttttaaattttgatctacaaagttccaaaattgcggtggtccacgatcgataaaaataaccgaagtc |
1664970 |
T |
|
| Q |
319 |
tatcaacttccatggttctttaaagaactcatggaaataaaagacagcaaagtttggactcatgtctaacttaattttacaatgaaaaagagcagaaaat |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1664969 |
tatcaacttccatggttctttaaagaactcatggaaataaaagacagcaaagtttggactcatgtctaacttaattttacaatgaaaaagagcagaaaat |
1664870 |
T |
|
| Q |
419 |
atggacaaataaaatcacaataacaagtacttgacatagttgacaaaactgcaaaatttaactctaaaacatcaattttaattcaaacaaactcttcaat |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1664869 |
atggacaaataaaatcacaataacaagtacttgacatagttgagaaaactgcaaaatttaactctaaaacatcaattttaattcaaacaaactcttcaat |
1664770 |
T |
|
| Q |
519 |
cctttattatactttcatttcaagataagaactcaaacaaataggnnnnnnnccgacaaaataacgaataggaattagttacataaaattctataagaat |
618 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1664769 |
cctttattatactttcatttcaagataagaactcaaacaaataggtttttttgcgacaaaataacgaataggagttagttacataaaattctataagaat |
1664670 |
T |
|
| Q |
619 |
cacttgtctatatacaaatttgggaaacaacattaatgtttttgatgtctctgc |
672 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1664669 |
cacttgtctatatacaaatttgggaaacaacattaatgtttttgatgtctctgc |
1664616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 79 - 190
Target Start/End: Complemental strand, 1665201 - 1665090
Alignment:
| Q |
79 |
caatcaggtgtctatcagtaataaacaaaaacacatgaaagttcaaaaaaggcaagaagaataatgatgttcatggacacaactgtcgagtcaagtggtt |
178 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1665201 |
caatcaggtgtctatcagcaataaacaaaaacacatgaaagttcaaaaaaggaaagaagaataatgatgttcatggacacaactgtcaagtcaagtggtt |
1665102 |
T |
|
| Q |
179 |
cttgtgaattct |
190 |
Q |
| |
|
|||||||||||| |
|
|
| T |
1665101 |
cttgtgaattct |
1665090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University