View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_high_74 (Length: 381)
Name: NF11745_high_74
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_high_74 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 11 - 367
Target Start/End: Original strand, 30587564 - 30587920
Alignment:
| Q |
11 |
cataggtttgggaattgatgctaataacgtgtaagcacacgcatattacatttaaatgtggtgaggattagtcttaaacacacccattctcaagagatnn |
110 |
Q |
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| T |
30587564 |
cataggtttgggaattgatgctaataacgtgtaagcacacgcatattacatttaaatgtggtgaggattagtcttaaacacacccatcctcaagagataa |
30587663 |
T |
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| Q |
111 |
nnnnntgcagaacacaaatttgccaatgtgttcttgttaaaaaacttctttctgaacactaatatcatgtttggttttctgttgagaatgtgtcaaccac |
210 |
Q |
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| T |
30587664 |
aaaaatgcagaacacaaatttgccaatgtgttcttgttaaaaaacttctttctgaacactaatatcatgtttggttttctgttgagaatgtgtcaaccac |
30587763 |
T |
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| Q |
211 |
ctttgggcaaaagctacaagagagcagaacattcctgatagaagataatcacagctctcaagcctctagataaactacatttctctcatctaaaattttg |
310 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30587764 |
ctttgggcaaaagctacatgagagcagaacattcctgatagaagatattcacagctctcaagcctctagataaactacatttctctcatctaaagttttg |
30587863 |
T |
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| Q |
311 |
tttgtcattcacttgctactgatcacatttgtcaaatgattgacagaaagtaaatcc |
367 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
30587864 |
tttgtcattcacttgctactgatcacatttttcaaatgattgacagaaagtaaatcc |
30587920 |
T |
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