View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_high_78 (Length: 369)
Name: NF11745_high_78
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_high_78 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 23 - 228
Target Start/End: Original strand, 5869542 - 5869747
Alignment:
| Q |
23 |
aaaagattgattgagggaacaccttgtcctatttttcttacttttgctttttcacacacacccctctacaacaaaagtgtcccattttcttcttactttg |
122 |
Q |
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| T |
5869542 |
aaaagattgattgagggaacaccttgtcctatttttcttacttttgctttttcacacacacccctctacaacaaaagtgtcccattttcttcttactttg |
5869641 |
T |
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| Q |
123 |
tgagaatgatgttttaacattttgaaaagattccaataactgatcacctgtgaacttccaaacacaataattcagtctttggtccttactcctttcattc |
222 |
Q |
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| T |
5869642 |
tgagaatgatgttttaacattttgaaaagattccaataactgatcacctgtgaacttccaaacacaataattcagtctttggtccttactcctttcattc |
5869741 |
T |
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| Q |
223 |
ttattt |
228 |
Q |
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|||||| |
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| T |
5869742 |
ttattt |
5869747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 223 - 348
Target Start/End: Original strand, 5870345 - 5870470
Alignment:
| Q |
223 |
ttatttttacttcctaccaatgtaaaacaatgatttatttttcactctattatcctaattcaccttttttctttcatggtccttttgtaaattaaagagc |
322 |
Q |
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| T |
5870345 |
ttatttttacttcctaccaatgtaaaacaatgatttatttttcactctattatcctaattcaccttttttctttcttggtccttttgtaaattaaagagc |
5870444 |
T |
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| Q |
323 |
cgatatgtagccgtttatgtattgat |
348 |
Q |
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| T |
5870445 |
caatatgtagccgtttatgtattgat |
5870470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 6223432 - 6223490
Alignment:
| Q |
100 |
tgtcccattttcttcttactttgtgagaatgatgttttaacattttgaaaagattccaa |
158 |
Q |
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| T |
6223432 |
tgtcccattttcttctcattttgtgagagtgatgttttaacgtttacaaaagattccaa |
6223490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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