View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_high_82 (Length: 361)
Name: NF11745_high_82
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_high_82 |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 202 - 353
Target Start/End: Complemental strand, 34254759 - 34254608
Alignment:
| Q |
202 |
acaacgacgttaaagctaatcttcgcagattcacttcccgctttccttctcctatcgccaaggataatcgtggttggattcttgatcctattgctctcgc |
301 |
Q |
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| T |
34254759 |
acaacgacgttaaagctaatcttcgcagattcacttcccgctttccttctcctatcgccaaggataatcgtggttggattcttgatcctattgctctcgc |
34254660 |
T |
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| Q |
302 |
actttcttccaccatttcaggtggagctgttacttgtgcttctcttcatctc |
353 |
Q |
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| T |
34254659 |
actttcttccatcatttcaggtggagctgttacttgtgcttctcttcatctc |
34254608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 34254916 - 34254860
Alignment:
| Q |
45 |
acttccgccatgttccaacggatccgcccctccctcgtcacttcattccttcaaaga |
101 |
Q |
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| T |
34254916 |
acttccgccatgttccaacggatccgcccctccctcgtcacttcattccttcaaaga |
34254860 |
T |
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