View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_high_83 (Length: 360)
Name: NF11745_high_83
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_high_83 |
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Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 40959146 - 40958803
Alignment:
| Q |
1 |
ccacaccattaaaaccttaattctgcctagtattcatctgaaaactttggataacgccatagatgatgtgggtcatggctnnnnnnnccaacacatttta |
100 |
Q |
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| T |
40959146 |
ccacaccattaaaaccttaattctgcctagtattcatctgaaaactttggataacaccatagatgatgtgggtcatggctaaaaaaaccaacatatttta |
40959047 |
T |
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| Q |
101 |
ttagacatttgatatcatggtcgttaaaaataataagtaatataatacaaaatgtattcaactacaagaaaaaagaagtcccactgtcccaccttataca |
200 |
Q |
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| T |
40959046 |
ttagacatttgatatcctggtcgttaaaaataataagtaatataatacaaaatgtattcaactacaagaaaaaagaagtcccactgtcccaccttataca |
40958947 |
T |
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| Q |
201 |
aaataaaatgtagcagtggcaagtgattttttatctctaaagtttcaaggacattgctcataaacatttaaggttaacgatcaatattaaaaaggtaact |
300 |
Q |
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| T |
40958946 |
aaataaaatgtagcagtggcaagtgattttttatctctaaagtttcaaggacattgctcataaacatttaaggttaacgatccatattaaaaaggtaact |
40958847 |
T |
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| Q |
301 |
cccaaccttgagattaaatgctaactgtcgtagcttttgtctgt |
344 |
Q |
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| T |
40958846 |
cccaaccttgagattaaatgctaactgtcgtagcttttgtctgt |
40958803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 129 - 339
Target Start/End: Complemental strand, 40946024 - 40945818
Alignment:
| Q |
129 |
aataataagtaatataatacaaaatg--tattcaactacaagaaaaaagaagtcccactgtcccaccttatacaaaataaaatgtagcagtggcaagtga |
226 |
Q |
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| T |
40946024 |
aataataagtaatataataaaaaaaacctattcaactacaacaaaaaa--agtcccactgtcccaccttatccaaaatcatatgtcgtggtgacaagtga |
40945927 |
T |
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| Q |
227 |
ttttttatctctaaagtttcaaggacattgctcataaacatttaaggttaacgatcaatattaaaaaggtaactcccaaccttgagattaaatgctaact |
326 |
Q |
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| T |
40945926 |
ttattcatctcttaagtttcaaagac---gctgaaaaacatttaaggttaataatccatattgaaaa-gtaacttccaaccttgagattaaagactagct |
40945831 |
T |
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| Q |
327 |
gtcgtagcttttg |
339 |
Q |
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| T |
40945830 |
gtcgtaacttttg |
40945818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 321
Target Start/End: Original strand, 22507655 - 22507713
Alignment:
| Q |
263 |
aacatttaaggttaacgatcaatattaaaaaggtaactcccaaccttgagattaaatgc |
321 |
Q |
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| T |
22507655 |
aacatttaaggttaataattcatattaaaaaagtaactcacaaccttaagattaaatgc |
22507713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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