View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11745_high_92 (Length: 352)
Name: NF11745_high_92
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_high_92 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 9 - 351
Target Start/End: Original strand, 2097043 - 2097385
Alignment:
| Q |
9 |
agcagagaaaccccccacagaacccccaacatcagagagaaccaatgatacagccaaaccaagacccctggagaaattaaatcatttcattgcagaaatt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2097043 |
agcagagaaaccccccacagaacccccaacatcagagagaaccaatgatacagccaaaccaagacccctggagaaattaaatcatttcattgcagaaatt |
2097142 |
T |
|
| Q |
109 |
ccaaatggtccacacaacaacgtgccaaact-aaagccagaccaaaccttggtttttcttagacctaaaactcgtnnnnnnnncctcaaaaactccttca |
207 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
2097143 |
ccaaatggttcacacaacaacgtgccaaactaaaagccagaccaaactttggtttttcttagacctaagactcgtaaaaaaaa-ctcaaaaactccttca |
2097241 |
T |
|
| Q |
208 |
gataaagagcctttgaaactcccacatgattaatcttcagaattgactctatttctagctagcatccgtctccatgttctcctccaaatcaatcaaccct |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2097242 |
gataaagagcctttgaaactcccacatgattaatcttcagaattgactctatttctagctagcatctgtctccatgttctcctccaaatcaatcaaccct |
2097341 |
T |
|
| Q |
308 |
gctttcgccatcggtgtcaaagcctgggtcgctgctccaaccca |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2097342 |
gctttcgccatcggtgtcaaagcctgggtcgctgatccaaccca |
2097385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University