View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_high_94 (Length: 351)
Name: NF11745_high_94
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_high_94 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 67 - 336
Target Start/End: Complemental strand, 49821577 - 49821309
Alignment:
| Q |
67 |
cacacctttcgaactcaataagatactaaacaccaaatatcctccataagtatatctccaatttccaaacatcatgcaatatgcaagaatgcgagcactt |
166 |
Q |
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| T |
49821577 |
cacacctttcgaactcaataagatactaaacaccaaatatcctccataagtatatctccaatttccaaacatcatgcaatatgcaagaatgcgagcactt |
49821478 |
T |
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| Q |
167 |
cgttcacaataggtattcttaaagaaagcnnnnnnnnnnnngagcaatgaagttcttcaaaccggagttgttgaaaaagtacacgccacatacacccatt |
266 |
Q |
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| T |
49821477 |
cgttcacaataggtattcttaaagaaagcaaaaaaaaaaa-gagcaatgaagttcttcaaaccggagttgttgaaaaagtacacgccacatacacccatt |
49821379 |
T |
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| Q |
267 |
gatgctacgtgaacccaaataaacaagtttgaatatttatcaaaccacaaatacatctctagtcaataat |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49821378 |
gatgctacgtgaacccaaataaacaagtttgaatatttatcaaaccacaaatacatctctagtcaataat |
49821309 |
T |
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