View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_101 (Length: 347)
Name: NF11745_low_101
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_101 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 6e-96; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 55984520 - 55984764
Alignment:
| Q |
1 |
tattgcacaatcataaattgcgtaaaaatgaaattagtttactagcatatacaacggaaaaacactaacaaaattttggaagaaactagcag-------- |
92 |
Q |
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| T |
55984520 |
tattgcacaatcataaactgcgtaaaaatgaaattagtttactagcatatacaacggaaaaacactaacaaaattttggaagaaactagcagaatatagc |
55984619 |
T |
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| Q |
93 |
--caatctagagaaaaggaaatttgtaaaagaaaaaacatcatcataactgtgta-----gcacgagttagtgtattaaagcaattaaaaaacatcatta |
185 |
Q |
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| T |
55984620 |
agcaatctagagaaagggaaatttgtaaaagaaaaaacatcttcataactgtgtattaaagcacgagttagtgtattaaagcaattaaaaaacatcatta |
55984719 |
T |
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| Q |
186 |
taaatgtatcaatgttatgcaatataaagttcataaataaaacat |
230 |
Q |
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| T |
55984720 |
taaatgtatcaatgttatgcaatataaagttcataaataaaacat |
55984764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 222 - 326
Target Start/End: Original strand, 55986368 - 55986472
Alignment:
| Q |
222 |
ataaaacatttaacaccaacaaaagcaagatacgtatgttagacttcaccaaagtaaagaggacaggtgcaaatgcacataatatactctcgaaagatta |
321 |
Q |
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| T |
55986368 |
ataaaacatttaacaccaacaaaagcaagataggtatgttagacttcaccaaagtaaagaggacaggtgcaaatgcacataacatactctcgaaagatta |
55986467 |
T |
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| Q |
322 |
gtacc |
326 |
Q |
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||||| |
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| T |
55986468 |
gtacc |
55986472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 55968416 - 55968349
Alignment:
| Q |
1 |
tattgcacaatcataaattgcgtaaaaatgaaattagtttactagcatatacaacggaaaaacactaa |
68 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55968416 |
tattgcacaatcataaactgcgtaaaaatgaaattagtttactagcatatacaacggaaaaacactaa |
55968349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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