View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_103 (Length: 345)
Name: NF11745_low_103
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_103 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 17 - 331
Target Start/End: Complemental strand, 1327375 - 1327061
Alignment:
| Q |
17 |
acatcaattacatatatgcaatcacaatttgacttcaattaaatgctgagcacacacgcctaatgtttccaacagaacctgtctttactccaatttgtcc |
116 |
Q |
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| T |
1327375 |
acatcaattacatatatgtaatcacaatttgacttcaattaaatgctgagcacacacgcctaatgtttccaacagaacctgtctttactccaatttgtcc |
1327276 |
T |
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| Q |
117 |
catttttaccatggactgaacaaaatcattttcaaaagaaggtccaaatgttggatttataggattaaagtaggaatcaatgacactctttgttacaaag |
216 |
Q |
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| T |
1327275 |
catttttaccatggactgaacaaaatcattttcaaaagaaggtccaaatgttggatttataggattgaagtaggaatcaatgacactctttgttacaaag |
1327176 |
T |
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| Q |
217 |
tcatcattaagtcttgcatcagaagctaacacagcaaaaccttcccttatgtttttcaatatactcttgtcaaatttcagatcactcccttcatccatgg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1327175 |
tcatcattaagtcttgcatcagaagctaacacagcaaaaccttcccttatgtttttcaatatactcttgtcaaatttcagatcactcccttcatccatgg |
1327076 |
T |
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| Q |
317 |
ctaaacggatgttga |
331 |
Q |
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||||||||||||||| |
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| T |
1327075 |
ctaaacggatgttga |
1327061 |
T |
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