View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_105 (Length: 343)
Name: NF11745_low_105
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_105 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 17 - 329
Target Start/End: Complemental strand, 54646844 - 54646531
Alignment:
| Q |
17 |
agaacaaagtacagctaaagtgatagaactacaggtttgaaaatttacctcagctttgtagtgtaatgcagttattcgattctcaatgcc-gctagctac |
115 |
Q |
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| T |
54646844 |
agaacaaagtacaactaaagtgatagaactacaggtttgaaaatttacctcagctttgtagtgtaatgcagttattcgattctcaatgccagctagctac |
54646745 |
T |
|
| Q |
116 |
tattatatgtgccacaatacacgcccctcnnnnnnncccaaacaccaaaaccacatttgtgtggtgaaattcctagtcatgctagaatatatacggactc |
215 |
Q |
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| T |
54646744 |
tattatatgtgccacaatacacgcccctcaaaaaaacccaaacaccaaaaccacatttgtgtggtgaaattcctagtcatgctagaatatatacggactc |
54646645 |
T |
|
| Q |
216 |
ccaaagctaatttcgtctaataattacttatttgacattgccagttcggaccgttgtaggtaatatcctttctgattcacatttctttttatcattttct |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
54646644 |
ccaaagctaatttcgtctaataattacttatttgacattgccagttcggatcgttgtaggtaatatcctttccgattcacatttctttttatcactttct |
54646545 |
T |
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| Q |
316 |
gctgttttcttcat |
329 |
Q |
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|||||||||||||| |
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| T |
54646544 |
gctgttttcttcat |
54646531 |
T |
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