View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11745_low_107 (Length: 340)

Name: NF11745_low_107
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11745_low_107
NF11745_low_107
[»] chr2 (25 HSPs)
chr2 (1-334)||(32917861-32918193)
chr2 (1-209)||(30731912-30732121)
chr2 (1-188)||(30733914-30734101)
chr2 (1-115)||(2841011-2841125)
chr2 (1-121)||(43850042-43850162)
chr2 (1-146)||(8973280-8973426)
chr2 (4-124)||(9026776-9026897)
chr2 (2-124)||(9020837-9020960)
chr2 (1-117)||(9008018-9008135)
chr2 (41-124)||(9032043-9032126)
chr2 (33-146)||(9023415-9023528)
chr2 (1-146)||(9030366-9030511)
chr2 (47-146)||(8979290-8979389)
chr2 (1-112)||(19232394-19232504)
chr2 (7-107)||(10763878-10763978)
chr2 (2-146)||(8988423-8988568)
chr2 (47-146)||(8984661-8984760)
chr2 (1-123)||(8992139-8992262)
chr2 (1-146)||(9016461-9016610)
chr2 (7-112)||(6471709-6471813)
chr2 (3-86)||(17225659-17225743)
chr2 (1-110)||(35701893-35702002)
chr2 (1-83)||(17275862-17275944)
chr2 (76-111)||(39814115-39814150)
chr2 (1-59)||(8912989-8913049)
[»] chr1 (21 HSPs)
chr1 (1-209)||(14654334-14654543)
chr1 (1-209)||(14664125-14664334)
chr1 (1-209)||(14669703-14669912)
chr1 (1-194)||(14683669-14683863)
chr1 (1-209)||(14674386-14674594)
chr1 (1-209)||(14679764-14679972)
chr1 (1-209)||(14681504-14681712)
chr1 (1-194)||(14708497-14708691)
chr1 (1-194)||(14706007-14706201)
chr1 (1-209)||(14652429-14652638)
chr1 (1-209)||(14662220-14662429)
chr1 (1-209)||(14716195-14716404)
chr1 (19-194)||(14676551-14676727)
chr1 (1-121)||(38175524-38175644)
chr1 (8-188)||(14667112-14667292)
chr1 (1-146)||(33988038-33988183)
chr1 (1-123)||(28366192-28366315)
chr1 (7-111)||(11872481-11872585)
chr1 (36-108)||(37422175-37422247)
chr1 (42-118)||(28698549-28698625)
chr1 (1-60)||(14703134-14703193)
[»] chr8 (14 HSPs)
chr8 (5-148)||(41841150-41841293)
chr8 (5-189)||(10944397-10944581)
chr8 (1-120)||(44878977-44879096)
chr8 (1-120)||(44880825-44880944)
chr8 (1-114)||(40054312-40054425)
chr8 (15-114)||(37682057-37682156)
chr8 (1-112)||(37679757-37679868)
chr8 (14-122)||(42555090-42555198)
chr8 (2-97)||(44582870-44582965)
chr8 (41-148)||(42220880-42220986)
chr8 (71-121)||(42872514-42872564)
chr8 (41-124)||(42092011-42092093)
chr8 (8-60)||(44583111-44583162)
chr8 (1-54)||(42554656-42554709)
[»] chr4 (17 HSPs)
chr4 (1-147)||(49106523-49106669)
chr4 (1-147)||(50077193-50077339)
chr4 (1-147)||(49108627-49108773)
chr4 (1-124)||(11652386-11652509)
chr4 (2-113)||(26998735-26998846)
chr4 (8-113)||(26984668-26984773)
chr4 (1-123)||(3461136-3461258)
chr4 (2-113)||(48205832-48205943)
chr4 (1-86)||(21503706-21503791)
chr4 (9-112)||(41013548-41013651)
chr4 (7-107)||(26982549-26982646)
chr4 (5-78)||(35806165-35806238)
chr4 (14-118)||(49533638-49533735)
chr4 (7-50)||(54677590-54677633)
chr4 (7-57)||(34481105-34481155)
chr4 (54-107)||(6431957-6432010)
chr4 (73-109)||(34481155-34481191)
[»] chr6 (7 HSPs)
chr6 (1-147)||(10795884-10796030)
chr6 (1-123)||(10791646-10791768)
chr6 (1-114)||(30521242-30521355)
chr6 (2-112)||(8875691-8875803)
chr6 (1-71)||(11333273-11333343)
chr6 (4-60)||(13136608-13136664)
chr6 (8-107)||(21216032-21216131)
[»] chr5 (8 HSPs)
chr5 (1-121)||(7524961-7525081)
chr5 (1-124)||(1716445-1716569)
chr5 (1-147)||(3643607-3643753)
chr5 (2-110)||(4103249-4103357)
chr5 (1-81)||(5350672-5350752)
chr5 (5-112)||(16037861-16037966)
chr5 (43-107)||(19261152-19261216)
chr5 (1-60)||(13636366-13636425)
[»] chr7 (2 HSPs)
chr7 (1-114)||(27134511-27134624)
chr7 (1-108)||(8128149-8128255)
[»] chr3 (1 HSPs)
chr3 (66-112)||(15758562-15758608)
[»] scaffold0549 (1 HSPs)
scaffold0549 (3-60)||(5450-5507)


Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 32918193 - 32917861
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggc 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32918193 cccctcaaaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggc 32918094  T
Q  101 cgagaaaggtatgagttgaaagatagactagctgctgcttttatatctacattttctatgttgctttcttgattcctcgatgtgggactatttcctactg 200  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32918093 cgagaaaggtatgagttgaatg-tagactagctgctgcttttatatctgcattttctatgttgctttcttgattcctcgatgtgggactatttcctactg 32917995  T
Q  201 tacgcatgttccttgctatgtttgactcaaatctagaaaaccatctaatatcacaccagattaaacaatttatttttatcatcggaaacttatgctaaaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32917994 tacgcatgttccttgctatgtttgactcaaatctagaaaaccatctaatatcacaccagattaaacaatgtatttttatcatcggaaacttatgctaaaa 32917895  T
Q  301 ttgttgttgcagatacaaaactattagaaaataa 334  Q
    ||| ||||||||||||||||||||||||||||||    
T  32917894 ttgctgttgcagatacaaaactattagaaaataa 32917861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 30732121 - 30731912
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30732121 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatattagatattaaactgataagaacagatactacacttgatcttagccaaaaggc 30732022  T
Q  101 cgagaaaggtatgagttgaaagatagactagctgctgcttttatatc-tacattttctatgttgctttcttgattcctcgatgtgggactatttcctact 199  Q
    |||||||||||||||||||||||| | || | |||||||||||||||  |||| ||||  ||||||||||||| | |||||||||||||||||||  | |    
T  30732021 cgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatcagacatgttctcagttgctttcttgactactcgatgtgggactatttctcatt 30731922  T
Q  200 gtacgcatgt 209  Q
    ||||||||||    
T  30731921 gtacgcatgt 30731912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 30734101 - 30733914
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggc 100  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30734101 cccctaaaaaaagtaatttaatatcatgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggc 30734002  T
Q  101 cgagaaaggtatgagttgaaagatagactagctgctgcttttatatct-acattttctatgttgctttcttgattcctcgatgtgggac 188  Q
    |||||||||||| ||||  || || ||    ||||||||||||||||| |||| ||||   ||| |||||||| |||||||||||||||    
T  30734001 cgagaaaggtataagttacaacat-gagatcctgctgcttttatatctgacatgttctcacttgttttcttgactcctcgatgtgggac 30733914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 2841011 - 2841125
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggc 100  Q
    ||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2841011 cccctcaaaaaagtaatttaatatcgtgtgatccattgaaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggc 2841110  T
Q  101 cgagaaaggtatgag 115  Q
    |||||||||||||||    
T  2841111 cgagaaaggtatgag 2841125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 43850162 - 43850042
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggc 100  Q
    |||||||||||||| |||||||||| |||||  |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  43850162 cccctcaaaaaagtgatttaatatcatgtgactcattgggccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggc 43850063  T
Q  101 cgagaaaggtatgagttgaaa 121  Q
    |||||||||||||||||||||    
T  43850062 cgagaaaggtatgagttgaaa 43850042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 8973426 - 8973280
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgt-gtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaagg 99  Q
    ||||| |||||||||||||||||| || |||| ||||||| ||||  ||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  8973426 ccccttaaaaaagtaatttaatattgttgtgacccattgggccactaatcagatattaaactaataagaacagatactacacttgatcttagccaaaagg 8973327  T
Q  100 ccgagaaaggtatgagttgaaagatagactagctgctgcttttatat 146  Q
    |||||||||||||||||||||||||  ||| |||  |||||||||||    
T  8973326 ccgagaaaggtatgagttgaaagatgaactcgcttatgcttttatat 8973280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 9026897 - 9026776
Alignment:
Q  4 ctcaaaaaagtaatttaatatcgt-gtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccg 102  Q
    ||||||||||||||||||||  || |||| ||||||| ||||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  9026897 ctcaaaaaagtaatttaatactgttgtgacccattgggccactaatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccg 9026798  T
Q  103 agaaaggtatgagttgaaagat 124  Q
    ||||||||||||||||||||||    
T  9026797 agaaaggtatgagttgaaagat 9026776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 2 - 124
Target Start/End: Complemental strand, 9020960 - 9020837
Alignment:
Q  2 ccctcaaaaaagtaatttaatatcgt-gtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggc 100  Q
    ||||||||||||||||||||||  || |||| ||||||| |||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  9020960 ccctcaaaaaagtaatttaatactgtagtgacccattgggccacatctcagatattaaattgataagaacagatactacacttgatcttagccaaaaggc 9020861  T
Q  101 cgagaaaggtatgagttgaaagat 124  Q
    ||||||| |||||| |||||||||    
T  9020860 cgagaaatgtatgaattgaaagat 9020837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 9008135 - 9008018
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtg-tgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaagg 99  Q
    |||||||||||||||||||||||  ||  ||| ||||||| ||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9008135 cccctcaaaaaagtaatttaatactgttatgacccattgggccactaatcagatattaaactgataagaacagatactacacttgatcttagccaaaagg 9008036  T
Q  100 ccgagaaaggtatgagtt 117  Q
    ||||||||||||||||||    
T  9008035 ccgagaaaggtatgagtt 9008018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 41 - 124
Target Start/End: Complemental strand, 9032126 - 9032043
Alignment:
Q  41 ccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagat 124  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9032126 ccacatatcagatattaaactgataagaacagatactacacttgatcttaaccaaaaggccgagaaaggtatgagttgaaagat 9032043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 33 - 146
Target Start/End: Complemental strand, 9023528 - 9023415
Alignment:
Q  33 ccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatagactagc 132  Q
    ||||||| ||||  ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||    
T  9023528 ccattgggccactaatcagatattaaactaataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagttggactcgc 9023429  T
Q  133 tgctgcttttatat 146  Q
    |  |||||||||||    
T  9023428 ttatgcttttatat 9023415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 9030511 - 9030366
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggc 100  Q
    |||||||||||||||||||||||  |||||| ||||||  |||| | ||| ||||||||  |||||||||||||||||||||||||||||||||||||||    
T  9030511 cccctcaaaaaagtaatttaatactgtgtgacccattgagccacttctcaaatattaaattgataagaacagatactacacttgatcttagccaaaaggc 9030412  T
Q  101 cgagaaaggtatgagttgaaagatagactagctgctgcttttatat 146  Q
    | |||||  |||||||||||||||  ||| |||  |||||||||||    
T  9030411 caagaaaaatatgagttgaaagatgaacttgcttatgcttttatat 9030366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 47 - 146
Target Start/End: Complemental strand, 8979389 - 8979290
Alignment:
Q  47 atcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatagactagctgctgcttttatat 146  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||  |||||||||||    
T  8979389 atcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgaacttgcttatgcttttatat 8979290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 19232394 - 19232504
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggc 100  Q
    ||||||||||| |||||||||||| |||||| ||| |||  |||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||    
T  19232394 cccctcaaaaaggtaatttaatattgtgtgacccaatgggtcacatatcag-tattaaactgataagaacagatattacacttgatcttagccaaaaggc 19232492  T
Q  101 cgagaaaggtat 112  Q
    ||||||||||||    
T  19232493 cgagaaaggtat 19232504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 7 - 107
Target Start/End: Original strand, 10763878 - 10763978
Alignment:
Q  7 aaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaa 106  Q
    |||||||||||||||||| || || ||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||| |||||||    
T  10763878 aaaaaagtaatttaatattgtatggaccattgatccacatatcagatattaaactgataagaacatatactacacttgatcttagtcaaaagaccgagaa 10763977  T
Q  107 a 107  Q
    |    
T  10763978 a 10763978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 2 - 146
Target Start/End: Complemental strand, 8988568 - 8988423
Alignment:
Q  2 ccctcaaaaaagtaatttaatatcgt-gtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggc 100  Q
    ||||||||||||||||||||||| || | |||||||||   |||  |||| ||||||||| |||||||||| ||||||||||||||||| ||||||||||    
T  8988568 ccctcaaaaaagtaatttaatattgttgagaaccattgagtcactgatcaaatattaaactgataagaacaaatactacacttgatcttcgccaaaaggc 8988469  T
Q  101 cgagaaaggtatgagttgaaagatagactagctgctgcttttatat 146  Q
    | |||| ||||| |||||||||||  ||| |||  |||||||||||    
T  8988468 caagaatggtataagttgaaagatgaactcgcttatgcttttatat 8988423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 47 - 146
Target Start/End: Complemental strand, 8984760 - 8984661
Alignment:
Q  47 atcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatagactagctgctgcttttatat 146  Q
    |||| |||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||| |||  |||||||||||    
T  8984760 atcaaatattaaactaataagaacaaatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaatatgaacttgcttatgcttttatat 8984661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 8992262 - 8992139
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgt-gtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaagg 99  Q
    ||||||||||||||||||||||||  | |||| ||||||| ||||  |||||||||| |||  ||||||||| ||||||||||||||||||||||||||     
T  8992262 cccctcaaaaaagtaatttaatattattgtgacccattgggccactaatcagatattgaactcataagaacatatactacacttgatcttagccaaaaga 8992163  T
Q  100 ccgagaaaggtatgagttgaaaga 123  Q
    | |||||||| ||||||| |||||    
T  8992162 ctgagaaaggcatgagttaaaaga 8992139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 9016610 - 9016461
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgt-gtgaaccattggtccacatatcagatattaaacc---gataagaacagatactacacttgatcttagccaaa 96  Q
    |||||||||||||||||||||||  || |||| ||||||| ||||  ||||||||||||||    ||||||||||||||||||| |||||||||||||||    
T  9016610 cccctcaaaaaagtaatttaatactgttgtgacccattgggccactaatcagatattaaactactgataagaacagatactacatttgatcttagccaaa 9016511  T
Q  97 aggccgagaaaggtatgagttgaaagatagactagctgctgcttttatat 146  Q
    ||| |||  |||||||||||| ||||||  ||| |||  |||||||||||    
T  9016510 aggtcgaataaggtatgagttaaaagatgaactcgcttatgcttttatat 9016461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 6471709 - 6471813
Alignment:
Q  7 aaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaa 106  Q
    |||||||||| |||||||| ||||| ||||| | ||  ||||||||||||||||  ||||||||| ||||||||||| ||||||||||||||| ||| ||    
T  6471709 aaaaaagtaacttaatatcatgtgatccattagaccgtatatcagatattaaactaataagaacatatactacactt-atcttagccaaaaggtcgaaaa 6471807  T
Q  107 aggtat 112  Q
    ||||||    
T  6471808 aggtat 6471813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 17225659 - 17225743
Alignment:
Q  3 cctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgat-aagaacagatactacacttgat 86  Q
    ||||||||||||||||||||||||| |||  |||||| ||| ||||||| |||||||||||| || |||||||||||||||||||    
T  17225659 cctcaaaaaagtaatttaatatcgtatgattcattggaccagatatcagttattaaaccgataaaaaacagatactacacttgat 17225743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 35702002 - 35701893
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggc 100  Q
    ||||||||||||||||  |||||||||||||    |||| |||||||||| |||||||||  |||| |||| |||| |||||||||||||||||||| |     
T  35702002 cccctcaaaaaagtaaactaatatcgtgtgacttgttggcccacatatcaaatattaaactaataaaaacaaataccacacttgatcttagccaaaaagt 35701903  T
Q  101 cgagaaaggt 110  Q
     |||||||||    
T  35701902 tgagaaaggt 35701893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 17275944 - 17275862
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacactt 83  Q
    ||||||||||| |||||| |||||||||||| ||||||| |||||||| | | ||| ||| |||||||||  |||||||||||    
T  17275944 cccctcaaaaatgtaattcaatatcgtgtgatccattggaccacatattaaagattgaactgataagaacgtatactacactt 17275862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 111
Target Start/End: Complemental strand, 39814150 - 39814115
Alignment:
Q  76 ctacacttgatcttagccaaaaggccgagaaaggta 111  Q
    |||||||||||| |||||||||||||||||||||||    
T  39814150 ctacacttgatcatagccaaaaggccgagaaaggta 39814115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 8913049 - 8912989
Alignment:
Q  1 cccctcaaaaaagtaatttaatatc--gtgtgaaccattggtccacatatcagatattaaa 59  Q
    |||||||||||||||||||||||||  ||||||  |||||| |||||||| | ||||||||    
T  8913049 cccctcaaaaaagtaatttaatatcatgtgtgattcattggaccacatattatatattaaa 8912989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 14654334 - 14654543
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14654334 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggc 14654433  T
Q  101 cgagaaaggtatgagttgaaagatagactagctgctgcttttata-tctacattttctatgttgctttcttgattcctcgatgtgggactatttcctact 199  Q
    |||||||||||||||||||||||| ||| |||||||||||||||| |  |||||||||  ||||||||||||| | |||||||||||||||||||  | |    
T  14654434 cgagaaaggtatgagttgaaagatggacaagctgctgcttttatattagacattttctcagttgctttcttgactgctcgatgtgggactatttctcatt 14654533  T
Q  200 gtacgcatgt 209  Q
    ||||||||||    
T  14654534 gtacgcatgt 14654543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 14664125 - 14664334
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14664125 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggc 14664224  T
Q  101 cgagaaaggtatgagttgaaagatagactagctgctgcttttata-tctacattttctatgttgctttcttgattcctcgatgtgggactatttcctact 199  Q
    |||||||||||||||||||||||| ||| |||||||||||||||| |  |||||||||  ||||||||||||| | |||||||||||||||||||  | |    
T  14664225 cgagaaaggtatgagttgaaagatggacaagctgctgcttttatattagacattttctcagttgctttcttgactgctcgatgtgggactatttctcatt 14664324  T
Q  200 gtacgcatgt 209  Q
    ||||||||||    
T  14664325 gtacgcatgt 14664334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 14669703 - 14669912
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14669703 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggc 14669802  T
Q  101 cgagaaaggtatgagttgaaagatagactagctgctgcttttatatc-tacattttctatgttgctttcttgattcctcgatgtgggactatttcctact 199  Q
    |||||||||||||||||||||||| | || | |||||||||||||||  |||| ||||  ||||||||||||| | |||||||||||||||||||  | |    
T  14669803 cgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatcagacatgttctcagttgctttcttgactactcgatgtgggactatttctcatt 14669902  T
Q  200 gtacgcatgt 209  Q
    ||||||||||    
T  14669903 gtacgcatgt 14669912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 14683863 - 14683669
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14683863 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggc 14683764  T
Q  101 cgagaaaggtatgagttgaaagatagactagctgctgcttttatatc-tacattttctatgttgctttcttgattcctcgatgtgggactatttc 194  Q
    ||||||||||||||||||||| || |||||||||| ||||||||| |  |||| ||||  ||||||||||||| | |||||||||||||||||||    
T  14683763 cgagaaaggtatgagttgaaatatggactagctgccgcttttataacagacatcttctcagttgctttcttgactgctcgatgtgggactatttc 14683669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 14674594 - 14674386
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggc 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14674594 cccctcaaaaaagtaatttaatatcatgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggc 14674495  T
Q  101 cgagaaaggtatgagttgaaagatagactagctgctgcttttatatc-tacattttctatgttgctttcttgattcctcgatgtgggactatttcctact 199  Q
    |||||||||||||||||| ||||| | |||| |||||||||||||||  ||| |||||  ||||||||||||| | |||||||||||||||||||| | |    
T  14674494 cgagaaaggtatgagttggaagattggctaggtgctgcttttatatcagaca-tttctccgttgctttcttgactgctcgatgtgggactatttcccatt 14674396  T
Q  200 gtacgcatgt 209  Q
    ||||||||||    
T  14674395 gtacgcatgt 14674386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 14679972 - 14679764
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggc 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14679972 cccctcaaaaaagtaatttaatatcatgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggc 14679873  T
Q  101 cgagaaaggtatgagttgaaagatagactagctgctgcttttatatc-tacattttctatgttgctttcttgattcctcgatgtgggactatttcctact 199  Q
    |||||||||||||||||| ||||| | |||| |||||||||||||||  ||| |||||  ||||||||||||| | |||||||||||||||||||| | |    
T  14679872 cgagaaaggtatgagttggaagattggctaggtgctgcttttatatcagaca-tttctccgttgctttcttgactgctcgatgtgggactatttcccatt 14679774  T
Q  200 gtacgcatgt 209  Q
    ||||||||||    
T  14679773 gtacgcatgt 14679764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 14681712 - 14681504
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14681712 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggc 14681613  T
Q  101 cgagaaaggtatgagttgaaagatagactagctgctgcttttatatc-tacattttctatgttgctttcttgattcctcgatgtgggactatttcctact 199  Q
    |||||||||||| |||||||| || | |||| |||||||||||||||  ||| |||||  ||||||||||||| | |||||||||||||||||||| | |    
T  14681612 cgagaaaggtataagttgaaaaatgggctaggtgctgcttttatatcagaca-tttctccgttgctttcttgactgctcgatgtgggactatttcccatt 14681514  T
Q  200 gtacgcatgt 209  Q
    ||||||||||    
T  14681513 gtacgcatgt 14681504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 14708691 - 14708497
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14708691 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggc 14708592  T
Q  101 cgagaaaggtatgagttgaaagatagactagctgctgcttttatatct-acattttctatgttgctttcttgattcctcgatgtgggactatttc 194  Q
    |||||||||||||||||||||||| | ||  ||  ||||||||||||| |||||||||   |||||||||||| | |||||||||||||||||||    
T  14708591 cgagaaaggtatgagttgaaagatgggctcactagtgcttttatatctgacattttctcaattgctttcttgactgctcgatgtgggactatttc 14708497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 14706201 - 14706007
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14706201 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggc 14706102  T
Q  101 cgagaaaggtatgagttgaaagatagactagctgctgcttttatatc-tacattttctatgttgctttcttgattcctcgatgtgggactatttc 194  Q
    |||||||||||||||||||||||| | || | |||||||||||||||  | |  ||||  ||| ||||||||| | |||||||||||||||||||    
T  14706101 cgagaaaggtatgagttgaaagatgggctcggtgctgcttttatatcagaaacgttctcagtttctttcttgactgctcgatgtgggactatttc 14706007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 14652638 - 14652429
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggc 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14652638 cccctcaaaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggc 14652539  T
Q  101 cgagaaaggtatgagttgaaagatagactagctgctgcttttatatc-tacattttctatgttgctttcttgattcctcgatgtgggactatttcctact 199  Q
    |||||||||||||| || || ||  ||| |||||||||| |||||||  |||| ||||  |||| |||||||| | |||||||||||||||||||  | |    
T  14652538 cgagaaaggtatgatttcaatgaaggaccagctgctgctcttatatcagacatcttctcagttgttttcttgactgctcgatgtgggactatttctcatt 14652439  T
Q  200 gtacgcatgt 209  Q
    ||||||||||    
T  14652438 gtacgcatgt 14652429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 14662429 - 14662220
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggc 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14662429 cccctcaaaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggc 14662330  T
Q  101 cgagaaaggtatgagttgaaagatagactagctgctgcttttatatc-tacattttctatgttgctttcttgattcctcgatgtgggactatttcctact 199  Q
    |||||||||||||| || || ||  ||| |||||||||| |||||||  |||| ||||  |||| |||||||| | |||||||||||||||||||  | |    
T  14662329 cgagaaaggtatgatttcaatgaaggaccagctgctgctcttatatcagacatcttctcagttgttttcttgactgctcgatgtgggactatttctcatt 14662230  T
Q  200 gtacgcatgt 209  Q
    ||||||||||    
T  14662229 gtacgcatgt 14662220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 14716404 - 14716195
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14716404 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatattagatattaaactgataagaacagatactacacttgatcttagccaaaaggc 14716305  T
Q  101 cgagaaaggtatgagttgaaagatagactagctgctgcttttatatc-tacattttctatgttgctttcttgattcctcgatgtgggactatttcctact 199  Q
    ||||||||||||||||||||||||  ||| | |||||||||||||||  |||| ||||  |||  |||| ||| | ||| |||||||||||||||  | |    
T  14716304 cgagaaaggtatgagttgaaagatgaactcggtgctgcttttatatcagacatcttctcagttattttcgtgactgctcaatgtgggactatttctcatt 14716205  T
Q  200 gtacgcatgt 209  Q
    ||||||||||    
T  14716204 gtacgcatgt 14716195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 14676727 - 14676551
Alignment:
Q  19 taatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttg 118  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14676727 taatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttg 14676628  T
Q  119 aaagatagactagctgctgcttttatatc-tacattttctatgttgctttcttgattcctcgatgtgggactatttc 194  Q
    ||| || |||||||||| ||||||||| |  |||| ||||  ||||||||||||| | |||||||||||||||||||    
T  14676627 aaatatggactagctgccgcttttataacagacatcttctcagttgctttcttgactgctcgatgtgggactatttc 14676551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 38175524 - 38175644
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggc 100  Q
    ||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  38175524 cccctcaaaaaagtaatttaatatcgtgtgacccattggaacacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggc 38175623  T
Q  101 cgagaaaggtatgagttgaaa 121  Q
    |||||||||||||||||||||    
T  38175624 cgagaaaggtatgagttgaaa 38175644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 8 - 188
Target Start/End: Original strand, 14667112 - 14667292
Alignment:
Q  8 aaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaa 107  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  14667112 aaaaagtaatttaatatcatgtgaaccattggtccacgtatcagatattaaactaataagaacagatactacacttgatcttagccaaaaggccgagaaa 14667211  T
Q  108 ggtatgagttgaaagatagactagctgctgcttttatatct-acattttctatgttgctttcttgattcctcgatgtgggac 188  Q
    ||||||||||  || || ||    ||||||||||||||||| |||| ||||  |||| |||||||| |||||||||||||||    
T  14667212 ggtatgagttacaacat-gagatcctgctgcttttatatctgacatgttctcagttgttttcttgactcctcgatgtgggac 14667292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 33988183 - 33988038
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggc 100  Q
    ||||| |||||||||||||||||||||||||  |||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  33988183 ccccttaaaaaagtaatttaatatcgtgtgactcattgagccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggc 33988084  T
Q  101 cgagaaaggtatgagttgaaagatagactagctgctgcttttatat 146  Q
    |||||||||||||||||||||||| ||||  ||  |||||||||||    
T  33988083 cgagaaaggtatgagttgaaagatggactcacttatgcttttatat 33988038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 28366192 - 28366315
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtc-cacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaagg 99  Q
    ||||| ||||||||||||||||||||||||| |||||||   ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28366192 ccccttaaaaaagtaatttaatatcgtgtgacccattggggtcacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaagg 28366291  T
Q  100 ccgagaaaggtatgagttgaaaga 123  Q
    ||||||||||||||||||||||||    
T  28366292 ccgagaaaggtatgagttgaaaga 28366315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 11872481 - 11872585
Alignment:
Q  7 aaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaa 106  Q
    ||||||||||||||||||||||||| ||||||  |||||||||| ||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||    
T  11872481 aaaaaagtaatttaatatcgtgtgacccattgaaccacatatcatatattaaactgataagaacagatagtacacttgatcttagtcaaaaggccgagaa 11872580  T
Q  107 aggta 111  Q
    |||||    
T  11872581 aggta 11872585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 37422247 - 37422175
Alignment:
Q  36 ttggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaag 108  Q
    |||| |||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||    
T  37422247 ttggaccacatatcagatattaaactgataagaacatatgctacacttgatcttagccaaaaggccgagaaag 37422175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 28698625 - 28698549
Alignment:
Q  42 cacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttg 118  Q
    ||||||||| ||||||||  ||||| || | |||||||| ||||||||||||||||| |||||||| ||||||||||    
T  28698625 cacatatcaaatattaaattgataaaaatatatactacatttgatcttagccaaaagaccgagaaatgtatgagttg 28698549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 14703193 - 14703134
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaac 60  Q
    ||||| |||||  ||||||||||||||||| || |||||||||||||||| |||||||||    
T  14703193 cccctaaaaaatttaatttaatatcgtgtggactattggtccacatatcaaatattaaac 14703134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 5 - 148
Target Start/End: Original strand, 41841150 - 41841293
Alignment:
Q  5 tcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgag 104  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  41841150 tcaaaaaagtaatttaatatcgtgtgacccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgag 41841249  T
Q  105 aaaggtatgagttgaaagatagactagctgctgcttttatatct 148  Q
    |||||||||||||||||||| |  | ||| ||||||||||||||    
T  41841250 aaaggtatgagttgaaagatgggttggcttctgcttttatatct 41841293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 5 - 189
Target Start/End: Original strand, 10944397 - 10944581
Alignment:
Q  5 tcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgag 104  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  10944397 tcaaaaaagtaatttaatatcgtgtgaaccatttgtccacatataagatattaaactgataagaacagatactacacttgatcttagccaaaaggtcgag 10944496  T
Q  105 aaaggtatgagttgaaagatagactagctgctgcttttatatct-acattttctatgttgctttcttgattcctcgatgtgggact 189  Q
    |||||||||||||  || || ||    ||  ||||||||||||| |||| ||||  |||| |||||||||||||||||||||||||    
T  10944497 aaaggtatgagttacaacat-gagctcctattgcttttatatctgacatgttctcggttgttttcttgattcctcgatgtgggact 10944581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 44879096 - 44878977
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggc 100  Q
    ||||||||||||||||||||||||| ||||| ||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  44879096 cccctcaaaaaagtaatttaatatcatgtgacccattgagccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggc 44878997  T
Q  101 cgagaaaggtatgagttgaa 120  Q
    ||||||||||||||||||||    
T  44878996 cgagaaaggtatgagttgaa 44878977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 44880825 - 44880944
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggc 100  Q
    ||||||||||||||||||||||||| ||||| ||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  44880825 cccctcaaaaaagtaatttaatatcatgtgacccattgagccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggc 44880924  T
Q  101 cgagaaaggtatgagttgaa 120  Q
    ||||||||||||||||||||    
T  44880925 cgagaaaggtatgagttgaa 44880944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 40054425 - 40054312
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggc 100  Q
    ||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  40054425 cccctcaaaaaagtaatttaatatcgtatgacccattgggccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggc 40054326  T
Q  101 cgagaaaggtatga 114  Q
    ||||||||||||||    
T  40054325 cgagaaaggtatga 40054312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 15 - 114
Target Start/End: Complemental strand, 37682156 - 37682057
Alignment:
Q  15 aatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 114  Q
    |||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37682156 aatttaatatcgtgtggaccattggcccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaatgtatga 37682057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 37679868 - 37679757
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggc 100  Q
    |||||||| |||  |||||||||||  ||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37679868 cccctcaataaataaatttaatatcaagtggaccattggcccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggc 37679769  T
Q  101 cgagaaaggtat 112  Q
    ||||||||||||    
T  37679768 cgagaaaggtat 37679757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 42555090 - 42555198
Alignment:
Q  14 taatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 113  Q
    ||||||||||||||||||  |||||  |||||||||| ||||||||| ||||| ||||||| || ||||||||||||||||||||  | |||||||||||    
T  42555090 taatttaatatcgtgtgattcattgaaccacatatcaaatattaaactgataaaaacagattctgcacttgatcttagccaaaagatcaagaaaggtatg 42555189  T
Q  114 agttgaaag 122  Q
    |||||||||    
T  42555190 agttgaaag 42555198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 97
Target Start/End: Complemental strand, 44582965 - 44582870
Alignment:
Q  2 ccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaa 97  Q
    |||||||||||||||||||||||| |   | ||||||  | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  44582965 ccctcaaaaaagtaatttaatatcatagaatccattgagctacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaa 44582870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 41 - 148
Target Start/End: Original strand, 42220880 - 42220986
Alignment:
Q  41 ccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatagactagctgctgctt 140  Q
    ||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||| |||| ||| |||||||||||||| ||  || ||  ||||||    
T  42220880 ccacatatcagatattaaactaataagaa-agatactacacttgatcttagccaaaagaccgaaaaatgtatgagttgaaagctatgctcgcctctgctt 42220978  T
Q  141 ttatatct 148  Q
    ||||||||    
T  42220979 ttatatct 42220986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 42872514 - 42872564
Alignment:
Q  71 agatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaa 121  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42872514 agatactacacttaatcttagccaaaaggccgagaaaggtatgagttgaaa 42872564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 41 - 124
Target Start/End: Complemental strand, 42092093 - 42092011
Alignment:
Q  41 ccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagat 124  Q
    |||||||||||||||||||| |||||||||| ||| ||||||| || |||| ||||||||  ||||||||||||||| ||||||    
T  42092093 ccacatatcagatattaaactgataagaacaaatattacacttaattttag-caaaaggcaaagaaaggtatgagtttaaagat 42092011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 44583162 - 44583111
Alignment:
Q  8 aaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaac 60  Q
    ||||||||||||||||||||||| |||||| || |||||||||||||||||||    
T  44583162 aaaaagtaatttaatatcgtgtgtaccatt-gttcacatatcagatattaaac 44583111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 42554656 - 42554709
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagata 54  Q
    |||||||||||| |||||||||||||||| |  |||||  ||||||||||||||    
T  42554656 cccctcaaaaaaataatttaatatcgtgtaattcattgacccacatatcagata 42554709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 5e-56; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 49106523 - 49106669
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggc 100  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  49106523 cccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggc 49106622  T
Q  101 cgagaaaggtatgagttgaaagatagactagctgctgcttttatatc 147  Q
    ||||||||||||||||||||||   | || ||| |||||||||||||    
T  49106623 cgagaaaggtatgagttgaaagggtggctggcttctgcttttatatc 49106669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 50077193 - 50077339
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggc 100  Q
    ||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  50077193 cccctcaaaaaagtaatttaatatcatgtgaaccattggaacacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggc 50077292  T
Q  101 cgagaaaggtatgagttgaaagataga-ctagctgctgcttttatatc 147  Q
    ||||||||||||||||||||||| ||| || ||| |||||||||||||    
T  50077293 cgagaaaggtatgagttgaaaga-agagctggcttctgcttttatatc 50077339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 49108627 - 49108773
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggc 100  Q
    ||||||||||||||||||||||||||||||| ||||||   ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  49108627 cccctcaaaaaagtaatttaatatcgtgtgacccattgagtcacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggc 49108726  T
Q  101 cgagaaaggtatgagttgaaagatagactagctgctgcttttatatc 147  Q
    ||||||||||||||||||||| |||| || ||| ||| |||||||||    
T  49108727 cgagaaaggtatgagttgaaatataggctggcttctgattttatatc 49108773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 11652386 - 11652509
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggc 100  Q
    |||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11652386 cccctcaaaaaaataatttaatatcgtgtgacccattgggccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggc 11652485  T
Q  101 cgagaaaggtatgagttgaaagat 124  Q
    ||||||||||||||||| ||||||    
T  11652486 cgagaaaggtatgagttaaaagat 11652509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 2 - 113
Target Start/End: Original strand, 26998735 - 26998846
Alignment:
Q  2 ccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggcc 101  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26998735 ccctaaaaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggcc 26998834  T
Q  102 gagaaaggtatg 113  Q
    ||||||||||||    
T  26998835 gagaaaggtatg 26998846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 26984668 - 26984773
Alignment:
Q  8 aaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaa 107  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26984668 aaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaa 26984767  T
Q  108 ggtatg 113  Q
    ||||||    
T  26984768 ggtatg 26984773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 3461136 - 3461258
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggc 100  Q
    ||||| ||||||||||||||||||||||||| ||||||   ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3461136 ccccttaaaaaagtaatttaatatcgtgtgacccattgagtcacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggc 3461235  T
Q  101 cgagaaaggtatgagttgaaaga 123  Q
    |||||||||||||| ||||||||    
T  3461236 cgagaaaggtatgaattgaaaga 3461258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 2 - 113
Target Start/End: Complemental strand, 48205943 - 48205832
Alignment:
Q  2 ccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggcc 101  Q
    |||||||||||||||||||||||| ||| ||||| |||||||||||| ||||||||||   ||||||||||||||||||||| |||||||| ||||||||    
T  48205943 ccctcaaaaaagtaatttaatatcatgtaaaccaatggtccacatataagatattaaattaataagaacagatactacacttaatcttagctaaaaggcc 48205844  T
Q  102 gagaaaggtatg 113  Q
    ||||||||||||    
T  48205843 gagaaaggtatg 48205832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 21503791 - 21503706
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgat 86  Q
    |||||||||||| |||||||||||||||||| | ||||  |||||||||||||||||||| |||||||||||||||||||||||||    
T  21503791 cccctcaaaaaaataatttaatatcgtgtgacctattgagccacatatcagatattaaactgataagaacagatactacacttgat 21503706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 41013548 - 41013651
Alignment:
Q  9 aaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaag 108  Q
    |||| |||||||||| | |||||||| ||||||||||||||||||||||||| |||||||||| ||| || |||| |||||| ||||||||||||||||     
T  41013548 aaaaataatttaataccatgtgaacccttggtccacatatcagatattaaacggataagaacatatattatacttaatcttaaccaaaaggccgagaaaa 41013647  T
Q  109 gtat 112  Q
    ||||    
T  41013648 gtat 41013651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 107
Target Start/End: Complemental strand, 26982646 - 26982549
Alignment:
Q  7 aaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaa 106  Q
    |||||| | |||||||||| ||| || ||||| ||||||||| ||||| |||||   ||| ||||||| |||||||||||||||||||| ||||||||||    
T  26982646 aaaaaaatgatttaatatcatgtaaatcattgatccacatattagatactaaac---taataacagatgctacacttgatcttagccaagaggccgagaa 26982550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 35806238 - 35806165
Alignment:
Q  5 tcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatacta 78  Q
    |||||||||||||||||||||||| ||  |||| |   |||||||| ||||||||| |||||||||| ||||||    
T  35806238 tcaaaaaagtaatttaatatcgtgcgactcattagattacatatcatatattaaactgataagaacaaatacta 35806165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 49533638 - 49533735
Alignment:
Q  14 taatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 113  Q
    |||||||||||||||||| | ||||    |||||||||||||||     ||||||||||||| | ||||||||||||||| || ||||||||||||||||    
T  49533638 taatttaatatcgtgtgacctattgagtaacatatcagatatta-----ataagaacagata-tgcacttgatcttagcc-aagggccgagaaaggtatg 49533730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 54677633 - 54677590
Alignment:
Q  7 aaaaaagtaatttaatatcgtgtgaaccattggtccacatatca 50  Q
    ||||||||||||||||||||||||| ||||| | ||||||||||    
T  54677633 aaaaaagtaatttaatatcgtgtgatccattagaccacatatca 54677590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 34481105 - 34481155
Alignment:
Q  7 aaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatatta 57  Q
    ||||||||||||||||||| |||| | ||||| | ||||||||||||||||    
T  34481105 aaaaaagtaatttaatatcttgtggatcattgattcacatatcagatatta 34481155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 6431957 - 6432010
Alignment:
Q  54 attaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaa 107  Q
    |||||||  ||||||| |||||||| || ||||||||||||| |||||||||||    
T  6431957 attaaactaataagaagagatactaaacctgatcttagccaataggccgagaaa 6432010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 109
Target Start/End: Original strand, 34481155 - 34481191
Alignment:
Q  73 atactacacttgatcttagccaaaaggccgagaaagg 109  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  34481155 atactacactcgatcttagccaaaaggctgagaaagg 34481191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 3e-54; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 10795884 - 10796030
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggc 100  Q
    ||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10795884 cccctcaaaaaagtaatttaatatcgtgtgacccattgggtcacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggc 10795983  T
Q  101 cgagaaaggtatgagttgaaagataga-ctagctgctgcttttatatc 147  Q
    ||||||||||||||||||||||| ||| || ||| |||||||||||||    
T  10795984 cgagaaaggtatgagttgaaaga-agagctggcttctgcttttatatc 10796030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 10791646 - 10791768
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggc 100  Q
    ||||||||||||||||||||||||| ||||| |||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10791646 cccctcaaaaaagtaatttaatatcatgtgacccattggatcacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggc 10791745  T
Q  101 cgagaaaggtatgagttgaaaga 123  Q
    |||||||||||||||||||||||    
T  10791746 cgagaaaggtatgagttgaaaga 10791768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 30521355 - 30521242
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggc 100  Q
    ||||||||||||  |||| ||||||||||||  |  |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||     
T  30521355 cccctcaaaaaataaattgaatatcgtgtgaggcgatggtccacatatcagatattaaactgataagaacagatactacacttgatctcagccaaaaggt 30521256  T
Q  101 cgagaaaggtatga 114  Q
    ||||||||||||||    
T  30521255 cgagaaaggtatga 30521242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 8875803 - 8875691
Alignment:
Q  2 ccctcaaaaaagta--atttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaagg 99  Q
    ||||||||||||||  |||||||||||||| | | ||||| |||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||    
T  8875803 ccctcaaaaaagtataatttaatatcgtgtaatctattggaccacatatcagatattaaattgataagaacagatattacacttgatcttagccaaaagg 8875704  T
Q  100 ccgagaaaggtat 112  Q
    ||| |||| ||||    
T  8875703 ccgggaaatgtat 8875691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 11333343 - 11333273
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaaca 71  Q
    ||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||| ||||||||||    
T  11333343 cccctcaaaaaagtaatttaatatcgtgtgatccgttggaccacatatcagatattaaactgataagaaca 11333273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 13136664 - 13136608
Alignment:
Q  4 ctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaac 60  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  13136664 ctcaaaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaac 13136608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 21216131 - 21216032
Alignment:
Q  8 aaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaa 107  Q
    |||||||||||||||||  |||||  |||||  |||||||| ||||||||||| |||||||| |||| ||| || ||||||||| |||||| || |||||    
T  21216131 aaaaagtaatttaatattttgtgattcattgagccacatataagatattaaactgataagaatagatgctatacatgatcttagtcaaaagaccaagaaa 21216032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 5e-50; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 7525081 - 7524961
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggc 100  Q
    ||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  7525081 cccctcaaaaaagtaatttaatatcgtgtgatccattggatcacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggc 7524982  T
Q  101 cgagaaaggtatgagttgaaa 121  Q
    |||||||||||||| ||||||    
T  7524981 cgagaaaggtatgacttgaaa 7524961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 1716445 - 1716569
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccatt-ggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaagg 99  Q
    ||||| ||||||||||||||||||||||||| ||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1716445 ccccttaaaaaagtaatttaatatcgtgtgacccatttggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaagg 1716544  T
Q  100 ccgagaaaggtatgagttgaaagat 124  Q
    |||||||||||||||||| ||||||    
T  1716545 ccgagaaaggtatgagttaaaagat 1716569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 3643753 - 3643607
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggc 100  Q
    ||||| ||||||||||||||||||||||||| ||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3643753 ccccttaaaaaagtaatttaatatcgtgtgacccaatgggccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggc 3643654  T
Q  101 cgagaaaggtatgagttgaaagatagactagctgctgcttttatatc 147  Q
    |||||||||||||| || ||||  || || ||| ||| |||||||||    
T  3643653 cgagaaaggtatgaatttaaagtaagtctcgcttctgtttttatatc 3643607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 2 - 110
Target Start/End: Complemental strand, 4103357 - 4103249
Alignment:
Q  2 ccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggcc 101  Q
    |||| ||||||| |||||||||||||||| || ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||     
T  4103357 ccctaaaaaaagcaatttaatatcgtgtggactattgggccacatatcagatattaaactgataagaacagatactacacttgatcttaaccaaaatgct 4103258  T
Q  102 gagaaaggt 110  Q
    |||||||||    
T  4103257 gagaaaggt 4103249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 5350752 - 5350672
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacac 81  Q
    |||||||| |||  |||||||||||||||| |||||||  |||||||||||||||||||| ||||| || |||||||||||    
T  5350752 cccctcaagaaataaatttaatatcgtgtggaccattgtcccacatatcagatattaaactgataacaatagatactacac 5350672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 16037966 - 16037861
Alignment:
Q  5 tcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgag 104  Q
    ||||||||||||||||||||||| ||| ||||| | |||| ||||| |||||||    ||||||||| |||||||||||||||||||  ||| |||||||    
T  16037966 tcaaaaaagtaatttaatatcgtttgacccattagaccac-tatcaaatattaagataataagaacaaatactacacttgatcttag-aaaacggccgag 16037869  T
Q  105 aaaggtat 112  Q
    ||| ||||    
T  16037868 aaaagtat 16037861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 43 - 107
Target Start/End: Original strand, 19261152 - 19261216
Alignment:
Q  43 acatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaa 107  Q
    |||||||||||||| ||| |||||||||| ||| ||||||||||||||  |||||||| ||||||    
T  19261152 acatatcagatatttaacggataagaacatatattacacttgatcttaatcaaaaggctgagaaa 19261216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 13636425 - 13636366
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaac 60  Q
    |||||||| ||  |||||||||| |||||| ||| ||| |||||||||||||||||||||    
T  13636425 cccctcaagaacttaatttaataccgtgtggaccgttgatccacatatcagatattaaac 13636366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 27134624 - 27134511
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggc 100  Q
    ||||||||||||||||||||||||||| |||  |||| | ||||||||||||||||||||| |||||||||||||||| | ||||||||||  |||||||    
T  27134624 cccctcaaaaaagtaatttaatatcgtttgactcattagaccacatatcagatattaaaccaataagaacagatactagatttgatcttagtgaaaaggc 27134525  T
Q  101 cgagaaaggtatga 114  Q
    ||| ||||||||||    
T  27134524 cgaaaaaggtatga 27134511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 8128255 - 8128149
Alignment:
Q  1 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggc 100  Q
    |||||||| |||  |||||||||| |||||| ||||||| |||||||||| |||||||||  | ||||||| ||||||||||| |||||| |||||||      
T  8128255 cccctcaagaaataaatttaatattgtgtga-ccattggcccacatatcatatattaaactaaaaagaacatatactacacttaatcttaaccaaaagaa 8128157  T
Q  101 cgagaaag 108  Q
    ||||||||    
T  8128156 cgagaaag 8128149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 15758562 - 15758608
Alignment:
Q  66 agaacagatactacacttgatcttagccaaaaggccgagaaaggtat 112  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||    
T  15758562 agaacagatattacacttgatcttagccaaaaggctgagaaaggtat 15758608  T

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Target: scaffold0549 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 5507 - 5450
Alignment:
Q  3 cctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaac 60  Q
    ||||||||||  ||||||||||||||||||| ||||| ||| ||||||||||||||||    
T  5507 cctcaaaaaataaatttaatatcgtgtgaacaattggcccatatatcagatattaaac 5450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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