View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11745_low_11 (Length: 664)

Name: NF11745_low_11
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11745_low_11
NF11745_low_11
[»] chr6 (16 HSPs)
chr6 (18-645)||(34898644-34899269)
chr6 (65-176)||(1485125-1485235)
chr6 (105-225)||(34620921-34621041)
chr6 (105-225)||(34748358-34748478)
chr6 (112-226)||(882728-882842)
chr6 (105-213)||(34027359-34027467)
chr6 (105-176)||(31305826-31305897)
chr6 (105-149)||(2234550-2234595)
chr6 (65-143)||(30926790-30926868)
chr6 (109-213)||(25388116-25388219)
chr6 (105-176)||(4910943-4911014)
chr6 (139-228)||(434163-434253)
chr6 (181-235)||(19601372-19601426)
chr6 (181-223)||(34026417-34026459)
chr6 (105-161)||(852567-852623)
chr6 (105-165)||(17225887-17225947)
[»] chr7 (11 HSPs)
chr7 (65-237)||(27571858-27572029)
chr7 (65-223)||(38123598-38123755)
chr7 (105-228)||(45557400-45557523)
chr7 (107-235)||(40561678-40561806)
chr7 (125-235)||(33853404-33853514)
chr7 (105-229)||(22310385-22310509)
chr7 (109-175)||(40795969-40796035)
chr7 (109-213)||(12306760-12306866)
chr7 (107-176)||(41788353-41788422)
chr7 (206-235)||(45823307-45823336)
chr7 (105-213)||(40491613-40491721)
[»] chr4 (12 HSPs)
chr4 (122-237)||(33843763-33843878)
chr4 (105-176)||(55927749-55927820)
chr4 (105-151)||(4243422-4243468)
chr4 (105-145)||(33844012-33844052)
chr4 (105-176)||(8604601-8604672)
chr4 (181-232)||(48045675-48045726)
chr4 (105-151)||(2207114-2207160)
chr4 (105-171)||(32818354-32818420)
chr4 (130-175)||(25319108-25319153)
chr4 (114-151)||(32100336-32100373)
chr4 (105-165)||(10185229-10185289)
chr4 (106-165)||(16551993-16552050)
[»] chr2 (11 HSPs)
chr2 (105-231)||(1976788-1976916)
chr2 (105-176)||(44439289-44439360)
chr2 (130-176)||(15220840-15220886)
chr2 (105-176)||(16013683-16013760)
chr2 (107-177)||(37420171-37420243)
chr2 (71-165)||(42982546-42982639)
chr2 (206-244)||(11650668-11650706)
chr2 (105-151)||(42741012-42741058)
chr2 (132-177)||(40401621-40401666)
chr2 (191-235)||(3476349-3476393)
chr2 (132-176)||(4908852-4908896)
[»] scaffold0361 (1 HSPs)
scaffold0361 (105-176)||(14093-14164)
[»] chr3 (15 HSPs)
chr3 (109-233)||(36302222-36302348)
chr3 (105-230)||(46853459-46853584)
chr3 (74-151)||(30301002-30301079)
chr3 (105-244)||(51285605-51285744)
chr3 (65-173)||(40147832-40147939)
chr3 (65-151)||(35058357-35058443)
chr3 (105-174)||(35264392-35264461)
chr3 (72-176)||(27266773-27266876)
chr3 (105-171)||(31708223-31708289)
chr3 (130-231)||(5406964-5407061)
chr3 (105-164)||(37335025-37335084)
chr3 (112-231)||(40136096-40136214)
chr3 (105-215)||(3776557-3776667)
chr3 (106-176)||(35253446-35253516)
chr3 (115-176)||(29475364-29475425)
[»] chr1 (21 HSPs)
chr1 (71-176)||(48548993-48549095)
chr1 (115-230)||(1233350-1233465)
chr1 (109-151)||(28287340-28287382)
chr1 (105-170)||(213522-213587)
chr1 (112-177)||(1514385-1514450)
chr1 (134-235)||(6932104-6932205)
chr1 (65-151)||(8381962-8382047)
chr1 (107-151)||(20026168-20026212)
chr1 (107-151)||(24587949-24587993)
chr1 (113-177)||(52263625-52263689)
chr1 (105-176)||(4458421-4458492)
chr1 (105-176)||(34915101-34915172)
chr1 (105-151)||(7790646-7790692)
chr1 (105-150)||(47892393-47892438)
chr1 (105-173)||(3016197-3016265)
chr1 (105-165)||(10324928-10324988)
chr1 (105-145)||(17284131-17284171)
chr1 (105-176)||(30557539-30557608)
chr1 (109-161)||(30850393-30850445)
chr1 (139-203)||(35961437-35961501)
chr1 (108-164)||(52339719-52339775)
[»] chr8 (9 HSPs)
chr8 (109-214)||(16972005-16972110)
chr8 (109-176)||(32927931-32927998)
chr8 (105-176)||(35495295-35495366)
chr8 (105-151)||(13384658-13384704)
chr8 (105-176)||(32767422-32767495)
chr8 (184-230)||(38386430-38386476)
chr8 (134-234)||(2778577-2778677)
chr8 (105-213)||(26100088-26100196)
chr8 (207-235)||(43024963-43024991)
[»] chr5 (8 HSPs)
chr5 (105-230)||(15368508-15368632)
chr5 (108-176)||(8591519-8591587)
chr5 (124-211)||(35138967-35139054)
chr5 (105-175)||(36639972-36640042)
chr5 (115-152)||(7925431-7925468)
chr5 (190-235)||(9952555-9952600)
chr5 (106-150)||(9185020-9185064)
chr5 (130-174)||(37886019-37886063)


Alignment Details
Target: chr6 (Bit Score: 559; Significance: 0; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 18 - 645
Target Start/End: Original strand, 34898644 - 34899269
Alignment:
Q  18 cagagatcacctagacgaagaaacagtaagttagcaaataagtggtgagaatcgattctacttgaagctagaaattggagnnnnnnnattctagaattga 117  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||       |||||||||||||    
T  34898644 cagagatcacctagacgaagaaacagtaaattagcaaataagtggtgagaatcgattctacttgaagctagaaattagagtttttttattctagaattga 34898743  T
Q  118 ttttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagccagaatcaattcaat 217  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||    
T  34898744 ttttaacactcgaatttattgttcaactcactttaacacaaatgtatcgaa-cataaattgtattaccttcgactcacttta-gccagaatcaattcaat 34898841  T
Q  218 caaaatcaatttttgtcaacgccaaacatacacttaattttgaaaagactactagagggagaggcctaccgtagctgcttatgatcatggcaagaacggg 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34898842 caaaatcaatttttgtcaacgccaaacatacacttaattttgaaaatactactagagggagaggcctaccgtagctgcttatgatcatggcaagaacggg 34898941  T
Q  318 acctctgtgtgcctgccaagaaagaccttccttaaagggggtcgaaaattgttgatccactttccatgacctaatcttgccatccttatggccagtccag 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34898942 acctctgtgtgcctgccaagaaagaccttccttaaagggggtcgaaaattgttgatccactttccatgacctaatcttgccatccttatggccagtccag 34899041  T
Q  418 accatcttattcccgttgtcgacggtcaaacaaaatgtaggagaggtatcagcagattcataaaaaggcgcagcgtcctcatctcccctcctaacccttc 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  34899042 accatcttattcccgttgtcgacggtcaaacaaaatgtaggagaggtatcagcagattcataaaaaggtgcagcgtcctcatctcccctcctaacccttc 34899141  T
Q  518 ctcccagaccgcaaccgtgttcataggccttttgaaactcccacaccctcaccccactttcctgtccagcccacaactgtgtttcggtacatgcaatgtt 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  34899142 ctcccagaccgcaaccgtgttcataggccttttgaaactcccacaccctcaccccacattcctgtccagcccacagctgtgtttcggtacatgcaatgtt 34899241  T
Q  618 tctgaggaatttccctacctgagtctcc 645  Q
    ||||||||||||||||||||||||||||    
T  34899242 tctgaggaatttccctacctgagtctcc 34899269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 65 - 176
Target Start/End: Complemental strand, 1485235 - 1485125
Alignment:
Q  65 agaatcgattctacttgaagctagaaattggagnnnnnnnattctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtat 164  Q
    ||||| ||||||||||||| |||||||||||||       |||||||||||||||||||||||| |||||||||||||||||||||| |||  | |||||    
T  1485235 agaattgattctacttgaatctagaaattggagcttttg-attctagaattgattttaacactcaaatttattgttcaactcacttttacataagtgtat 1485137  T
Q  165 cgaaacataaat 176  Q
    | |||| |||||    
T  1485136 ccaaacgtaaat 1485125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 105 - 225
Target Start/End: Original strand, 34620921 - 34621041
Alignment:
Q  105 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagcca 204  Q
    ||||||||||||||||| |||||  |||||||| ||||||||||||| |||  |||||||| ||||||||||    ||| |||| ||||| ||  |||||    
T  34620921 attctagaattgatttttacactaaaatttatttttcaactcacttttacataaatgtatccaaacataaatcactttaccttcaactcaattctagcca 34621020  T
Q  205 gaatcaattcaatcaaaatca 225  Q
    ||||| ||||| |||||||||    
T  34621021 gaatccattcactcaaaatca 34621041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 105 - 225
Target Start/End: Original strand, 34748358 - 34748478
Alignment:
Q  105 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagcca 204  Q
    ||||||||||||||||| |||||  |||||||| ||||||||||||| |||  |||||||| ||||||||||    ||| |||| ||||| ||  |||||    
T  34748358 attctagaattgatttttacactaaaatttatttttcaactcacttttacataaatgtatccaaacataaatcactttaccttcaactcaattctagcca 34748457  T
Q  205 gaatcaattcaatcaaaatca 225  Q
    ||||| ||||| |||||||||    
T  34748458 gaatccattcactcaaaatca 34748478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 226
Target Start/End: Original strand, 882728 - 882842
Alignment:
Q  112 aattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagccagaatcaa 211  Q
    |||||||||| ||| || ||||||||||| ||||||||||  || ||||||||| ||||||||||  | ||| |||| ||||| ||| | | ||||||||    
T  882728 aattgatttttacattcaaatttattgtttaactcacttttgcatgaatgtatccaaacataaatcattttaccttcaactcaattttaactagaatcaa 882827  T
Q  212 ttcaatcaaaatcaa 226  Q
    |||| ||||| ||||    
T  882828 ttcactcaaactcaa 882842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 213
Target Start/End: Complemental strand, 34027467 - 34027359
Alignment:
Q  105 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagcca 204  Q
    ||||||||||||||||| |||||| |||||||| ||||||||||| | ||| |||| |||| || ||||||  || | |  ||| ||||||||| |||||    
T  34027467 attctagaattgatttttacactcaaatttattattcaactcactcttacatgaatatatctaaccataaaccgtctcactttcaactcacttttagcca 34027368  T
Q  205 gaatcaatt 213  Q
     ||||||||    
T  34027367 caatcaatt 34027359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 105 - 176
Target Start/End: Complemental strand, 31305897 - 31305826
Alignment:
Q  105 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat 176  Q
    ||||||||||||||||  |||||| ||||||||| |||||||||||| |||  ||| |||| ||||||||||    
T  31305897 attctagaattgatttatacactcaaatttattgatcaactcacttttacattaatatatccaaacataaat 31305826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 2234550 - 2234595
Alignment:
Q  105 attctagaattgattttaacactcgaattta-ttgttcaactcact 149  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||    
T  2234550 attctagaattgattttaacactcaaatttatttgttcaactcact 2234595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 143
Target Start/End: Complemental strand, 30926868 - 30926790
Alignment:
Q  65 agaatcgattcta-cttgaagctagaaattggagnnnnnnnattctagaattgattttaacactcgaatttattgttcaa 143  Q
    ||||| ||||||| ||||||||||||||||||||       ||||||||||||||||| |||||| ||||||||||||||    
T  30926868 agaatggattctaacttgaagctagaaattggagtttttt-attctagaattgatttttacactcaaatttattgttcaa 30926790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 109 - 213
Target Start/End: Original strand, 25388116 - 25388219
Alignment:
Q  109 tagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagccagaat 208  Q
    ||||||||||||| |||||| ||||||||| |||||||||||| |||  ||| |||| |||  |||||  ||||| || | ||||| |||||| ||||||    
T  25388116 tagaattgattttgacactcaaatttattg-tcaactcacttttacataaatatatccaaatgtaaatcatattacctccaactcattttaagtcagaat 25388214  T
Q  209 caatt 213  Q
    |||||    
T  25388215 caatt 25388219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 176
Target Start/End: Original strand, 4910943 - 4911014
Alignment:
Q  105 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat 176  Q
    ||||||||||||||||| |||  | ||||||| |||| ||||||||| |||  |||||||| ||||||||||    
T  4910943 attctagaattgattttcacatacaaatttatagttcgactcacttttacataaatgtatccaaacataaat 4911014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 139 - 228
Target Start/End: Complemental strand, 434253 - 434163
Alignment:
Q  139 ttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagccagaatcaattcaa-tcaaaatcaatt 228  Q
    ||||||||||||| |||||||| |||| ||||| ||||  | ||| || | ||||||||| ||||| |||| |||||| ||||||||||||    
T  434253 ttcaactcacttttacacgaatatatccaaacacaaatcattttacctgcaactcacttttagccataatccattcaactcaaaatcaatt 434163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 19601426 - 19601372
Alignment:
Q  181 ttatcttcgactcactttaagccagaatcaattcaatcaaaatcaatttttgtca 235  Q
    |||||||| ||||||| | ||  | ||||||||||||||||||||||||||||||    
T  19601426 ttatcttcaactcactattagttaaaatcaattcaatcaaaatcaatttttgtca 19601372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 34026459 - 34026417
Alignment:
Q  181 ttatcttcgactcactttaagccagaatcaattcaatcaaaat 223  Q
    |||||||| ||||||||| |||||||||||||||| |||||||    
T  34026459 ttatcttcaactcacttttagccagaatcaattcactcaaaat 34026417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 852567 - 852623
Alignment:
Q  105 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatg 161  Q
    ||||||||||||||||| |||| | ||| ||||||| |||||||||| ||| |||||    
T  852567 attctagaattgatttttacacccaaatgtattgtttaactcacttttacatgaatg 852623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 105 - 165
Target Start/End: Original strand, 17225887 - 17225947
Alignment:
Q  105 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatc 165  Q
    ||||||||||||||||| |||  | ||||||| |||||||||| ||| ||| |||||||||    
T  17225887 attctagaattgatttttacatacaaatttatagttcaactcagttttacatgaatgtatc 17225947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 5e-27; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 65 - 237
Target Start/End: Original strand, 27571858 - 27572029
Alignment:
Q  65 agaatcgattctacttgaagctagaaattggagnnnnnnnattctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtat 164  Q
    ||||| |||||||||||||| ||||||||||||       |||||||||||||||||||||||| | |||||| |||||||||| || |||  |||||||    
T  27571858 agaattgattctacttgaagttagaaattggagcttttg-attctagaattgattttaacactcaagtttattattcaactcacatttacataaatgtat 27571956  T
Q  165 cgaaacataaattgtattatcttcgactcactttaagccagaatcaattcaatcaaaatcaatttttgtcaac 237  Q
    | || |||||||  | ||| |||  ||||||||| ||||| ||||||||||  ||||||||||||||||||||    
T  27571957 ccaaccataaatcattttacctttaactcacttttagccataatcaattcacccaaaatcaatttttgtcaac 27572029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 65 - 223
Target Start/End: Complemental strand, 38123755 - 38123598
Alignment:
Q  65 agaatcgattctacttgaagctagaaattggagnnnnnnnattctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtat 164  Q
    ||||| |||||||||||||||||||||||| ||       ||||||||||||||||| |||||| ||||||||| |||||||||||| ||| |||||| |    
T  38123755 agaattgattctacttgaagctagaaattgtagcttcta-attctagaattgatttttacactcaaatttattggtcaactcacttttacatgaatgtgt 38123657  T
Q  165 cgaaacataaattgtattatcttcgactcactttaagccagaatcaattcaatcaaaat 223  Q
    |  |||| |||||   ||| |||| ||||| ||| || || |||||||| | |||||||    
T  38123656 ccgaacacaaattactttaccttcaactcaattttagtcataatcaatttactcaaaat 38123598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 228
Target Start/End: Original strand, 45557400 - 45557523
Alignment:
Q  105 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagcca 204  Q
    ||||||| ||||||||| |||| | ||||| | | |||||||||||| ||| ||||||||| ||||| ||||    ||| |||| ||||||||| || ||    
T  45557400 attctaggattgatttttacacacaaatttgtagctcaactcacttttacatgaatgtatccaaacacaaatcactttaccttcaactcacttttagtca 45557499  T
Q  205 gaatcaattcaatcaaaatcaatt 228  Q
    ||||||||||| ||||||||||||    
T  45557500 gaatcaattcattcaaaatcaatt 45557523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 107 - 235
Target Start/End: Complemental strand, 40561806 - 40561678
Alignment:
Q  107 tctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagccaga 206  Q
    ||||||||| ||||  |||||| ||| |||||||||||||||||| ||| ||||||||| ||||||||||    |||  ||| ||||| |||   | |||    
T  40561806 tctagaattaatttatacactcaaatatattgttcaactcacttttacatgaatgtatccaaacataaatcactttactttcaactcaatttttactaga 40561707  T
Q  207 atcaattcaatcaaaatcaatttttgtca 235  Q
    ||||||||| |||||||||| ||||||||    
T  40561706 atcaattcactcaaaatcaacttttgtca 40561678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 235
Target Start/End: Complemental strand, 33853514 - 33853404
Alignment:
Q  125 actcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagccagaatcaattcaatcaaaatc 224  Q
    |||| |||||||||| || ||  |||| ||| ||||||||| ||||||||||    ||| |||| ||||||| | |||||||||||||||| | ||||||    
T  33853514 actcaaatttattgtccagcttgcttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatc 33853415  T
Q  225 aatttttgtca 235  Q
    |||||||||||    
T  33853414 aatttttgtca 33853404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 229
Target Start/End: Complemental strand, 22310509 - 22310385
Alignment:
Q  105 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagcca 204  Q
    ||||||||||| ||||| |||||  |||||||| ||||| ||||||| ||  ||||||||| ||||||||||  | |||||||| ||||| |||   |||    
T  22310509 attctagaattaatttttacacttaaatttatttttcaattcacttttacgagaatgtatccaaacataaatctttttatcttcaactcaatttttacca 22310410  T
Q  205 gaatcaattcaatcaaaatcaattt 229  Q
     | ||||| || |||||||||||||    
T  22310409 aactcaatccactcaaaatcaattt 22310385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 175
Target Start/End: Complemental strand, 40796035 - 40795969
Alignment:
Q  109 tagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaa 175  Q
    |||||||||||||||||||| |||||| | ||||| ||||||| ||| ||||||||| || ||||||    
T  40796035 tagaattgattttaacactcaaatttactattcaaatcacttttacatgaatgtatccaatcataaa 40795969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 213
Target Start/End: Original strand, 12306760 - 12306866
Alignment:
Q  109 tagaattgattttaacactcgaattta--ttgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagccaga 206  Q
    ||||||||||||| |||||| |||| |   | ||||||||||||| ||| |||| || | ||||||||||    |||||||| ||||||||| |||||||    
T  12306760 tagaattgatttttacactcaaattcactatattcaactcacttttacatgaatctagccaaacataaatcactttatcttcaactcacttttagccaga 12306859  T
Q  207 atcaatt 213  Q
    |||||||    
T  12306860 atcaatt 12306866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 176
Target Start/End: Original strand, 41788353 - 41788422
Alignment:
Q  107 tctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat 176  Q
    |||| ||||||||||||||||| |||||  ||||||||||||||| | |  |||||||  ||||||||||    
T  41788353 tctataattgattttaacactcaaatttgctgttcaactcacttttatattaatgtatacaaacataaat 41788422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 235
Target Start/End: Original strand, 45823307 - 45823336
Alignment:
Q  206 aatcaattcaatcaaaatcaatttttgtca 235  Q
    ||||||||||||||||||||||||||||||    
T  45823307 aatcaattcaatcaaaatcaatttttgtca 45823336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 105 - 213
Target Start/End: Original strand, 40491613 - 40491721
Alignment:
Q  105 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagcca 204  Q
    ||||||||||||| ||| |||| | ||||||  ||| |||||||||| ||| ||||||||| ||| ||||||    ||| |||| ||||||||| || ||    
T  40491613 attctagaattgacttttacacacaaatttaaagtttaactcacttttacatgaatgtatccaaaaataaatcactttaccttcaactcacttttagtca 40491712  T
Q  205 gaatcaatt 213  Q
     ||||||||    
T  40491713 aaatcaatt 40491721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 122 - 237
Target Start/End: Original strand, 33843763 - 33843878
Alignment:
Q  122 aacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagccagaatcaattcaatcaaa 221  Q
    |||||||||||||||||||||||||||| | ||| |||| |||| ||||||||||    |||  | | ||||||||| ||||||||||||||||||||||    
T  33843763 aacactcgaatttattgttcaactcactattacatgaatatatccaaacataaatcactttacatccaactcacttttagccagaatcaattcaatcaaa 33843862  T
Q  222 atcaatttttgtcaac 237  Q
    ||||||||||||||||    
T  33843863 atcaatttttgtcaac 33843878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 176
Target Start/End: Complemental strand, 55927820 - 55927749
Alignment:
Q  105 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat 176  Q
    ||||||||||||||  | |||||| |||||||||||||| ||||||| ||| ||||||||| ||||||||||    
T  55927820 attctagaattgatcgtcacactcaaatttattgttcaagtcacttttacatgaatgtatccaaacataaat 55927749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 4243422 - 4243468
Alignment:
Q  105 attctagaattgattttaacactcgaatttattgttcaactcacttt 151  Q
    ||||||||||||||||| |||||| |||||||||||| |||||||||    
T  4243422 attctagaattgatttttacactcaaatttattgttctactcacttt 4243468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 33844012 - 33844052
Alignment:
Q  105 attctagaattgattttaacactcgaatttattgttcaact 145  Q
    |||||| ||||||||||||||||| ||||||||||||||||    
T  33844012 attctaaaattgattttaacactcaaatttattgttcaact 33844052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 176
Target Start/End: Complemental strand, 8604672 - 8604601
Alignment:
Q  105 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat 176  Q
    ||||||||||||||||| |||| | ||||||| ||| ||  |||||| ||| ||||||||| ||||||||||    
T  8604672 attctagaattgattttcacacacaaatttatagttgaatgcacttttacatgaatgtatccaaacataaat 8604601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 232
Target Start/End: Complemental strand, 48045726 - 48045675
Alignment:
Q  181 ttatcttcgactcactttaagccagaatcaattcaatcaaaatcaatttttg 232  Q
    |||||||| ||||| ||| |||||||||||||| | ||||||||||||||||    
T  48045726 ttatcttcaactcagttttagccagaatcaatttactcaaaatcaatttttg 48045675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 2207114 - 2207160
Alignment:
Q  105 attctagaattgattttaacactcgaatttattgttcaactcacttt 151  Q
    |||||| ||||||||| ||||||| ||||||| ||||||||||||||    
T  2207114 attctataattgatttcaacactccaatttatggttcaactcacttt 2207160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 32818420 - 32818354
Alignment:
Q  105 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaaca 171  Q
    |||||||||||||||||  ||| | ||||||| |||||||| ||||| ||| ||||||||| |||||    
T  32818420 attctagaattgatttttgcacacaaatttatagttcaactaacttttacatgaatgtatccaaaca 32818354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 175
Target Start/End: Original strand, 25319108 - 25319153
Alignment:
Q  130 aatttattgttcaactcactttaacacgaatgtatcgaaacataaa 175  Q
    |||||||||||||||||||||| ||   ||||||||||||||||||    
T  25319108 aatttattgttcaactcacttttacgtaaatgtatcgaaacataaa 25319153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 151
Target Start/End: Original strand, 32100336 - 32100373
Alignment:
Q  114 ttgattttaacactcgaatttattgttcaactcacttt 151  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  32100336 ttgatttttacactcaaatttattgttcaactcacttt 32100373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 105 - 165
Target Start/End: Original strand, 10185229 - 10185289
Alignment:
Q  105 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatc 165  Q
    |||||| ||||||| || |||||| ||||||||||| |||||||||| |||  ||||||||    
T  10185229 attctaaaattgatctttacactcaaatttattgtttaactcacttttacattaatgtatc 10185289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 106 - 165
Target Start/End: Original strand, 16551993 - 16552050
Alignment:
Q  106 ttctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatc 165  Q
    |||||||||||||||| ||||   ||||||| |||||||||||||| ||| |||||||||    
T  16551993 ttctagaattgattttcacaca--aatttatagttcaactcacttttacatgaatgtatc 16552050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 105 - 231
Target Start/End: Complemental strand, 1976916 - 1976788
Alignment:
Q  105 attctagaattgatttta--acactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagc 202  Q
    |||||||||||||||||   |||||| ||||||||||| |||||||||| ||| ||||||||| |||||||| | |  ||| |||| ||||| ||  |||    
T  1976916 attctagaattgatttttttacactcaaatttattgttgaactcacttttacatgaatgtatccaaacataagtcgctttaccttcaactcaattctagc 1976817  T
Q  203 cagaatcaattcaatcaaaatcaattttt 231  Q
    ||||||||||||| |||||| ||||||||    
T  1976816 cagaatcaattcactcaaaaacaattttt 1976788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 176
Target Start/End: Original strand, 44439289 - 44439360
Alignment:
Q  105 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat 176  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||| |||  ||  |||| ||||||||||    
T  44439289 attctaaaattgattttaacactcaaatttattgttcaactcacttttacataaacatatccaaacataaat 44439360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 15220886 - 15220840
Alignment:
Q  130 aatttattgttcaactcactttaacacgaatgtatcgaaacataaat 176  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||    
T  15220886 aatttattgttcaactcactttaacatgaatgtatccaaacataaat 15220840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 176
Target Start/End: Complemental strand, 16013760 - 16013683
Alignment:
Q  105 attctagaattgattttaacactcgaatttattgttcaactcacttta------acacgaatgtatcgaaacataaat 176  Q
    ||||||||| ||||||| |||||| ||||||||| |||||||||||||      ||||||||||||| ||||||||||    
T  16013760 attctagaaatgatttttacactcaaatttattggtcaactcactttacagtttacacgaatgtatccaaacataaat 16013683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 177
Target Start/End: Complemental strand, 37420243 - 37420171
Alignment:
Q  107 tctagaattgattttaacactcgaatttattgttcaactcactttaac--acgaatgtatcgaaacataaatt 177  Q
    ||||||||||||||| |||||| |||||||| ||||||||||||| ||  ||| || ||| ||||||||||||    
T  37420243 tctagaattgatttttacactcaaatttattattcaactcacttttacttacgtatatattgaaacataaatt 37420171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 71 - 165
Target Start/End: Original strand, 42982546 - 42982639
Alignment:
Q  71 gattctacttgaagctagaaattggagnnnnnnnattctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatc 165  Q
    |||||||||||||||||||||||| ||       |||| |||||||||||| |||| | |||||||| | ||||||||||| ||| |||||||||    
T  42982546 gattctacttgaagctagaaattgtagcttttg-attccagaattgatttttacacacaaatttattttacaactcacttttacatgaatgtatc 42982639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 11650706 - 11650668
Alignment:
Q  206 aatcaattcaatcaaaatcaatttttgtcaacgccaaac 244  Q
    |||||||||| ||||||||||||||||||||||| ||||    
T  11650706 aatcaattcactcaaaatcaatttttgtcaacgcaaaac 11650668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 42741012 - 42741058
Alignment:
Q  105 attctagaattgattttaacactcgaatttattgttcaactcacttt 151  Q
    ||||||||||||||||| |||||| |||||| ||| |||||||||||    
T  42741012 attctagaattgatttttacactcaaatttactgtccaactcacttt 42741058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 177
Target Start/End: Complemental strand, 40401666 - 40401621
Alignment:
Q  132 tttattgttcaactcactttaacacgaatgtatcgaaacataaatt 177  Q
    |||||||||||||| ||||| ||| ||||||||| |||||||||||    
T  40401666 tttattgttcaactgacttttacatgaatgtatccaaacataaatt 40401621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 191 - 235
Target Start/End: Complemental strand, 3476393 - 3476349
Alignment:
Q  191 ctcactttaagccagaatcaattcaatcaaaatcaatttttgtca 235  Q
    |||||||| | |||||||||||||| | |||||||||||||||||    
T  3476393 ctcacttttatccagaatcaattcacttaaaatcaatttttgtca 3476349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 4908852 - 4908896
Alignment:
Q  132 tttattgttcaactcactttaacacgaatgtatcgaaacataaat 176  Q
    ||||||||||||  |||||||||| ||||||||| ||||||||||    
T  4908852 tttattgttcaatccactttaacatgaatgtatccaaacataaat 4908896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 105 - 176
Target Start/End: Complemental strand, 14164 - 14093
Alignment:
Q  105 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat 176  Q
    ||||||||||||||||| |||||| |||||||| ||||||||||||| ||| ||||||||| ||||||||||    
T  14164 attctagaattgatttttacactcaaatttatttttcaactcactttcacatgaatgtatccaaacataaat 14093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 109 - 233
Target Start/End: Original strand, 36302222 - 36302348
Alignment:
Q  109 tagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat--tgtattatcttcgactcactttaagccaga 206  Q
    |||||||||||||| ||||  |||||||||||||||||||||| ||| ||||| ||| | |||| |||  | | |||||||| ||||| ||| | || ||    
T  36302222 tagaattgattttagcacttaaatttattgttcaactcacttttacatgaatgaatccacacattaatcattttttatcttcaactcaattttaaccgga 36302321  T
Q  207 atcaattcaatcaaaatcaatttttgt 233  Q
    ||||||||| |||||||||||||||||    
T  36302322 atcaattcactcaaaatcaatttttgt 36302348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 105 - 230
Target Start/End: Complemental strand, 46853584 - 46853459
Alignment:
Q  105 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagcca 204  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||  ||| ||||   ||||||||    ||| |||| ||| ||||  |||||    
T  46853584 attctagaattgattttaacactcaaatttattgttcaactcacttttacataaatatatcctgacataaatcactttaccttcaacttacttgtagcca 46853485  T
Q  205 gaatcaattcaatcaaaatcaatttt 230  Q
     |||||||||| |||| |||||||||    
T  46853484 aaatcaattcactcaagatcaatttt 46853459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 74 - 151
Target Start/End: Complemental strand, 30301079 - 30301002
Alignment:
Q  74 tctacttgaagctagaaattggagnnnnnnnattctagaattgattttaacactcgaatttattgttcaactcacttt 151  Q
    |||| |||||||||||||||||||       |||||||||||| ||||||||||| ||||||||||||||| ||||||    
T  30301079 tctatttgaagctagaaattggagttttttaattctagaattggttttaacactcaaatttattgttcaacccacttt 30301002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 244
Target Start/End: Original strand, 51285605 - 51285744
Alignment:
Q  105 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagcca 204  Q
    |||||||||||||||||  ||||| ||||| ||||| ||| | |||| ||| ||||||||| || ||| ||||   |||  ||| ||||||||| |||||    
T  51285605 attctagaattgatttttgcactcaaatttgttgtttaacccgcttttacatgaatgtatccaagcatgaattactttacattcaactcacttttagcca 51285704  T
Q  205 gaatcaattcaatcaaaatcaatttttgtcaacgccaaac 244  Q
     ||| |||||| ||||||||||||||| ||| ||| ||||    
T  51285705 taataaattcactcaaaatcaatttttctcaccgcaaaac 51285744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 173
Target Start/End: Complemental strand, 40147939 - 40147832
Alignment:
Q  65 agaatcgattctacttgaagctagaaattggagnnnnnnnattctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtat 164  Q
    ||||| |||||||||| ||||||||| ||||||       |||||||||||||||| |||||| ||||||||  ||||||||||||| |||  |||||||    
T  40147939 agaattgattctacttcaagctagaatttggagcttttg-attctagaattgatttcaacacttgaatttatcattcaactcacttttacattaatgtat 40147841  T
Q  165 cgaaacata 173  Q
    | |||||||    
T  40147840 ccaaacata 40147832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 65 - 151
Target Start/End: Original strand, 35058357 - 35058443
Alignment:
Q  65 agaatcgattctacttgaagctagaaattggagnnnnnnnattctagaattgattttaacactcgaat-ttattgttcaactcacttt 151  Q
    ||||| ||||||||||| ||||||||||| |||       |||||||||||||||||||||||| ||| |||||||||||||||||||    
T  35058357 agaattgattctacttggagctagaaattcgagcttttg-attctagaattgattttaacactcaaatattattgttcaactcacttt 35058443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 35264461 - 35264392
Alignment:
Q  105 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataa 174  Q
    |||||||||||||||||||||||  |||||||||||||| ||| ||| ||| ||||||| | ||||||||    
T  35264461 attctagaattgattttaacacttaaatttattgttcaagtcatttttacatgaatgtacccaaacataa 35264392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 176
Target Start/End: Complemental strand, 27266876 - 27266773
Alignment:
Q  72 attctacttgaagctagaaattggagnnnnnnnattctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaaca 171  Q
    ||||||||||||||||||||||| ||       |||| |||||| ||||| |||||| |||||||||||||||| ||||| ||| |||  |||| |||||    
T  27266876 attctacttgaagctagaaattgtagctaatg-attcaagaattaatttttacactcaaatttattgttcaactaacttttacatgaaaatatctaaaca 27266778  T
Q  172 taaat 176  Q
    |||||    
T  27266777 taaat 27266773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 31708289 - 31708223
Alignment:
Q  105 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaaca 171  Q
    ||||||||||||||| |||||| | |||||||  ||||||||||||| ||| ||||||||| |||||    
T  31708289 attctagaattgattctaacacacaaatttataattcaactcacttttacatgaatgtatccaaaca 31708223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 130 - 231
Target Start/End: Original strand, 5406964 - 5407061
Alignment:
Q  130 aatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagccagaatcaattcaatcaaaatcaattt 229  Q
    |||||| | ||||| ||||||| ||| ||||||||| |||||||| ||    || |||| ||||| ||| ||| |||||||||||| |||||||||||||    
T  5406964 aatttactcttcaaatcacttttacatgaatgtatccaaacataactt----taccttcaactcaattttagctagaatcaattcactcaaaatcaattt 5407059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 37335084 - 37335025
Alignment:
Q  105 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtat 164  Q
    ||||||||||||||||| ||||| ||||| ||||||||||||| ||| | | ||||||||    
T  37335084 attctagaattgatttttacacttgaattcattgttcaactcatttttatatgaatgtat 37335025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 231
Target Start/End: Complemental strand, 40136214 - 40136096
Alignment:
Q  112 aattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagccagaatcaa 211  Q
    |||||||||||||| || |||| |||||| |||||| ||| |||  |||||||  ||||| ||| | | |||  ||| | |||||||| |||||||| ||    
T  40136214 aattgattttaacaatcaaattcattgttgaactcatttttacaaaaatgtattaaaacaaaaaatattttacattcaagtcacttta-gccagaattaa 40136116  T
Q  212 ttcaatcaaaatcaattttt 231  Q
    |||| |||||||||||||||    
T  40136115 ttcattcaaaatcaattttt 40136096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 105 - 215
Target Start/End: Original strand, 3776557 - 3776667
Alignment:
Q  105 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagcca 204  Q
    ||||||||||| ||||| |||||| ||||| ||| | |||||||||| |||  |||||||| || |||||||    |||  ||| ||||| ||| |||||    
T  3776557 attctagaattaatttttacactcaaatttgttgctgaactcacttttacatcaatgtatccaagcataaatcactttacattcaactcaattttagcca 3776656  T
Q  205 gaatcaattca 215  Q
    |||||||||||    
T  3776657 gaatcaattca 3776667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 106 - 176
Target Start/End: Complemental strand, 35253516 - 35253446
Alignment:
Q  106 ttctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat 176  Q
    |||||||||||||||| |||||| |||||||  ||||||||||||| ||| || ||| || ||| ||||||    
T  35253516 ttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaat 35253446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 176
Target Start/End: Complemental strand, 29475425 - 29475364
Alignment:
Q  115 tgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat 176  Q
    |||||||||||||| ||||| |||||||||||| ||| |||  || ||||| ||||||||||    
T  29475425 tgattttaacactcaaattttttgttcaactcagtttgacataaacgtatcaaaacataaat 29475364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 71 - 176
Target Start/End: Complemental strand, 48549095 - 48548993
Alignment:
Q  71 gattctacttgaagctagaaattggagnnnnnnnattctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaac 170  Q
    |||||||||||||||||||||||| ||       ||||||||||||||||| | ||||  ||||||||||||||||||||| |||  |||||||| ||||    
T  48549095 gattctacttgaagctagaaattgtagcttctg-attctagaattgatttttaaactc--atttattgttcaactcacttttacataaatgtatcaaaac 48548999  T
Q  171 ataaat 176  Q
    ||||||    
T  48548998 ataaat 48548993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 115 - 230
Target Start/End: Original strand, 1233350 - 1233465
Alignment:
Q  115 tgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagccagaatcaattc 214  Q
    ||||||| |||||| ||||||||||| |||||||||| ||| ||||||||| ||||||||||| | ||| |||  |||||  || | | | ||| |||||    
T  1233350 tgatttttacactcaaatttattgttgaactcactttcacatgaatgtatctaaacataaattattttaccttaaactcatgtttaactaaaattaattc 1233449  T
Q  215 aatcaaaatcaatttt 230  Q
    ||| ||||||||||||    
T  1233450 aatgaaaatcaatttt 1233465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 28287382 - 28287340
Alignment:
Q  109 tagaattgattttaacactcgaatttattgttcaactcacttt 151  Q
    |||||||||||||||||||| |||||||||||||||| |||||    
T  28287382 tagaattgattttaacactcaaatttattgttcaactaacttt 28287340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 170
Target Start/End: Complemental strand, 213587 - 213522
Alignment:
Q  105 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaac 170  Q
    ||||||||||||||||| | |||| ||||| |||||||||||||||| ||| ||||| ||| ||||    
T  213587 attctagaattgatttttaaactcaaatttgttgttcaactcacttttacatgaatgcatccaaac 213522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 177
Target Start/End: Original strand, 1514385 - 1514450
Alignment:
Q  112 aattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaatt 177  Q
    |||||||||| |||| | |||||||||||||||||| ||| ||| ||||||||| ||||| |||||    
T  1514385 aattgatttttacacacaaatttattgttcaactcatttttacatgaatgtatccaaacacaaatt 1514450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 235
Target Start/End: Complemental strand, 6932205 - 6932104
Alignment:
Q  134 tattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagccagaatcaattcaatcaaaatcaatttttgt 233  Q
    ||||||||||||||| || ||||||||| ||| ||||  | ||  | |||  ||| ||||||||| || ||||||||||||| |||||||||| ||||||    
T  6932205 tattgttcaactcacctttacacgaatgaatccaaacgaagatcattttacattcaactcacttttagtcagaatcaattcattcaaaatcaaattttgt 6932106  T
Q  234 ca 235  Q
    ||    
T  6932105 ca 6932104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 151
Target Start/End: Original strand, 8381962 - 8382047
Alignment:
Q  65 agaatcgattctacttgaagctagaaattggagnnnnnnnattctagaattgattttaacactcgaatttattgttcaactcacttt 151  Q
    ||||| |||||||||||||||||||||||| ||        |||||||||||||||| ||| || | ||||||||||||||||||||    
T  8381962 agaattgattctacttgaagctagaaattgtagcctctag-ttctagaattgatttttacattcaagtttattgttcaactcacttt 8382047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 20026212 - 20026168
Alignment:
Q  107 tctagaattgattttaacactcgaatttattgttcaactcacttt 151  Q
    |||||||||||||| ||||||| |||||||||||||| |||||||    
T  20026212 tctagaattgatttgaacactcaaatttattgttcaattcacttt 20026168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 24587949 - 24587993
Alignment:
Q  107 tctagaattgattttaacactcgaatttattgttcaactcacttt 151  Q
    |||| ||||||||||||||||| |||||||| |||||||||||||    
T  24587949 tctataattgattttaacactcaaatttattattcaactcacttt 24587993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 177
Target Start/End: Complemental strand, 52263689 - 52263625
Alignment:
Q  113 attgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaatt 177  Q
    ||||||||| |||||| ||||||||||| |||||| ||| |||  |||||||| |||||||||||    
T  52263689 attgatttttacactcaaatttattgtttaactcagttttacattaatgtatccaaacataaatt 52263625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 176
Target Start/End: Original strand, 4458421 - 4458492
Alignment:
Q  105 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat 176  Q
    ||||||||||||  ||||||||| ||||||||||| ||| ||||||| ||  ||||||||| ||| ||||||    
T  4458421 attctagaattggatttaacacttgaatttattgtacaattcacttttacctgaatgtatccaaatataaat 4458492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 176
Target Start/End: Original strand, 34915101 - 34915172
Alignment:
Q  105 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat 176  Q
    ||||||||||||||| |||||| | | |||||  ||||||||||||| ||| ||||||||  ||||||||||    
T  34915101 attctagaattgattctaacacaccattttataattcaactcacttttacatgaatgtattcaaacataaat 34915172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 7790692 - 7790646
Alignment:
Q  105 attctagaattgattttaacactcgaatttattgttcaactcacttt 151  Q
    |||||| |||||||||| |||| | ||||||||||||||||||||||    
T  7790692 attctataattgatttttacacacaaatttattgttcaactcacttt 7790646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 150
Target Start/End: Complemental strand, 47892438 - 47892393
Alignment:
Q  105 attctagaattgattttaacactcgaatttattgttcaactcactt 150  Q
    |||||||||||||||||||||||  ||  |||||||||||||||||    
T  47892438 attctagaattgattttaacactaaaacatattgttcaactcactt 47892393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 3016197 - 3016265
Alignment:
Q  105 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacata 173  Q
    |||||||||||||| || ||||   ||||||  |||||||||||||| ||| ||||||||| |||||||    
T  3016197 attctagaattgatgtttacacataaatttacggttcaactcacttttacatgaatgtatccaaacata 3016265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 105 - 165
Target Start/End: Complemental strand, 10324988 - 10324928
Alignment:
Q  105 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatc 165  Q
    |||||| |||||||||| |||||| |||||||||||  ||||||||| |||  ||||||||    
T  10324988 attctataattgatttttacactcaaatttattgttatactcacttttacattaatgtatc 10324928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 17284131 - 17284171
Alignment:
Q  105 attctagaattgattttaacactcgaatttattgttcaact 145  Q
    |||||| |||||||||| |||||| ||||||||||||||||    
T  17284131 attctaaaattgatttttacactcaaatttattgttcaact 17284171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 105 - 176
Target Start/End: Original strand, 30557539 - 30557608
Alignment:
Q  105 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat 176  Q
    ||||||||||||||||| ||||   ||||||| |||||||||||||| | | ||||||||| ||||| ||||    
T  30557539 attctagaattgattttcacaca--aatttatagttcaactcacttttatatgaatgtatccaaacacaaat 30557608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 30850445 - 30850393
Alignment:
Q  109 tagaattgattttaacactcgaatttattgttcaactcactttaacacgaatg 161  Q
    |||||||||||||||||  | ||||||| |||||||||||||| ||| |||||    
T  30850445 tagaattgattttaacatacaaatttatagttcaactcacttttacatgaatg 30850393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 139 - 203
Target Start/End: Original strand, 35961437 - 35961501
Alignment:
Q  139 ttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagcc 203  Q
    ||||||||||||| ||| |||||||| |||||||||||  | ||| |||| ||||||||| ||||    
T  35961437 ttcaactcacttttacatgaatgtatagaaacataaatcattttaccttcaactcacttttagcc 35961501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 52339775 - 52339719
Alignment:
Q  108 ctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtat 164  Q
    |||||||||| ||| | |||| |||||||||||||| |||| || ||||||||||||    
T  52339775 ctagaattgagttttatactcaaatttattgttcaagtcacatttacacgaatgtat 52339719  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 214
Target Start/End: Complemental strand, 16972110 - 16972005
Alignment:
Q  109 tagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagccagaat 208  Q
    ||||||||||||| | || | |||||||||||||| ||||||| ||| ||||||||  ||||| ||||  | ||| |||| ||||||||| || | ||||    
T  16972110 tagaattgatttttaaacacaaatttattgttcaaatcacttttacatgaatgtattcaaacacaaatcattttaccttcaactcacttttagtctgaat 16972011  T
Q  209 caattc 214  Q
    ||||||    
T  16972010 caattc 16972005  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 176
Target Start/End: Original strand, 32927931 - 32927998
Alignment:
Q  109 tagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat 176  Q
    ||||||| ||||| |||| | ||||||| |||||||||||||| ||| ||||||||| ||||| ||||    
T  32927931 tagaattcatttttacacacaaatttatagttcaactcacttttacatgaatgtatccaaacacaaat 32927998  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 176
Target Start/End: Original strand, 35495295 - 35495366
Alignment:
Q  105 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat 176  Q
    |||||| |||||||||| | |||| |||||||||||||| ||||||| |   ||||||||| ||||||||||    
T  35495295 attctataattgatttttatactcaaatttattgttcaaatcacttttatttgaatgtatccaaacataaat 35495366  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 13384704 - 13384658
Alignment:
Q  105 attctagaattgattttaacactcgaatttattgttcaactcacttt 151  Q
    ||||||||||||||||| |||| | ||||||| ||||||||||||||    
T  13384704 attctagaattgattttcacacacaaatttatagttcaactcacttt 13384658  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 105 - 176
Target Start/End: Original strand, 32767422 - 32767495
Alignment:
Q  105 attctagaattgattttaacactcgaatttattgttcaactcactttaacac--gaatgtatcgaaacataaat 176  Q
    |||| |||| ||| ||| |||||  |||||||||||||||||||||| ||||  ||||||||| ||||||||||    
T  32767422 attcgagaactgacttttacacttaaatttattgttcaactcacttttacacatgaatgtatccaaacataaat 32767495  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 38386430 - 38386476
Alignment:
Q  184 tcttcgactcactttaagccagaatcaattcaatcaaaatcaatttt 230  Q
    ||||| ||| ||||| ||||||||||||||| |||||||||||||||    
T  38386430 tcttcaacttacttttagccagaatcaattctatcaaaatcaatttt 38386476  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 134 - 234
Target Start/End: Original strand, 2778577 - 2778677
Alignment:
Q  134 tattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagccagaatcaattcaatcaaaatcaatttttgt 233  Q
    ||||||||||||||||||  ||  ||| |||| ||| ||||||    |||||||| ||||||||| ||| ||||||| ||||   |||||||||||||||    
T  2778577 tattgttcaactcacttttgcataaatttatccaaaaataaatcactttatcttcaactcacttttagctagaatcagttcacataaaatcaatttttgt 2778676  T
Q  234 c 234  Q
    |    
T  2778677 c 2778677  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 105 - 213
Target Start/End: Complemental strand, 26100196 - 26100088
Alignment:
Q  105 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagcca 204  Q
    |||||| |||||||||| |||| | ||||||| |||||||||||||| |||  |||| ||| ||||| |||| |  ||| |||| ||||  ||| || ||    
T  26100196 attctataattgatttttacacacaaatttatggttcaactcacttttacataaatgcatccaaacacaaatagctttaccttcaactcgtttttagtca 26100097  T
Q  205 gaatcaatt 213  Q
    |||||||||    
T  26100096 gaatcaatt 26100088  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 207 - 235
Target Start/End: Original strand, 43024963 - 43024991
Alignment:
Q  207 atcaattcaatcaaaatcaatttttgtca 235  Q
    |||||||||||||||||||||||||||||    
T  43024963 atcaattcaatcaaaatcaatttttgtca 43024991  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 230
Target Start/End: Original strand, 15368508 - 15368632
Alignment:
Q  105 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagcca 204  Q
    |||||| ||||||| || |||||| ||| | |||||||| ||||||| ||| | ||||||  ||||||||||    ||  |||| ||||| ||| |||||    
T  15368508 attctataattgatctttacactcaaatatgttgttcaagtcacttttacatggatgtattcaaacataaatcac-ttcccttcaactcaatttcagcca 15368606  T
Q  205 gaatcaattcaatcaaaatcaatttt 230  Q
    ||||||||||| ||||||||||||||    
T  15368607 gaatcaattcactcaaaatcaatttt 15368632  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 8591519 - 8591587
Alignment:
Q  108 ctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat 176  Q
    ||||||||||||||  ||||| ||||| |||||||||||||||| | | ||||||||| ||| ||||||    
T  8591519 ctagaattgattttttcactcaaatttgttgttcaactcacttttataggaatgtatccaaatataaat 8591587  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 211
Target Start/End: Complemental strand, 35139054 - 35138967
Alignment:
Q  124 cactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagccagaatcaa 211  Q
    ||||| |||||||||||||||||||||| | | |||||||||  |||||||||  | ||| |||| ||||| ||| || |||||||||    
T  35139054 cactcaaatttattgttcaactcactttcatatgaatgtatctgaacataaatcattttaccttcaactcaattttagacagaatcaa 35138967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 105 - 175
Target Start/End: Original strand, 36639972 - 36640042
Alignment:
Q  105 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaa 175  Q
    |||||||||||| |||| |||||| |||||| |||||| |||||||| ||| |||  |||| |||||||||    
T  36639972 attctagaattgttttttacactcaaatttaatgttcacctcacttttacatgaacctatcaaaacataaa 36640042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 7925431 - 7925468
Alignment:
Q  115 tgattttaacactcgaatttattgttcaactcacttta 152  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  7925431 tgatttttacactcaaatttattgttcaactcacttta 7925468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 9952600 - 9952555
Alignment:
Q  190 actcactttaagccagaatcaattcaatcaaaatcaatttttgtca 235  Q
    ||||||||| | ||| |||||||||| |||||||||||||||||||    
T  9952600 actcacttttatccataatcaattcattcaaaatcaatttttgtca 9952555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 9185064 - 9185020
Alignment:
Q  106 ttctagaattgattttaacactcgaatttattgttcaactcactt 150  Q
    |||||||||||||||||||| |  ||||||| |||||||||||||    
T  9185064 ttctagaattgattttaacatttaaatttatcgttcaactcactt 9185020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 37886063 - 37886019
Alignment:
Q  130 aatttattgttcaactcactttaacacgaatgtatcgaaacataa 174  Q
    |||||||||||||||||||||| |||| |||||||  ||||||||    
T  37886063 aatttattgttcaactcacttttacacaaatgtattcaaacataa 37886019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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