View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_111 (Length: 337)
Name: NF11745_low_111
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_111 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 327
Target Start/End: Complemental strand, 39292035 - 39291718
Alignment:
| Q |
18 |
cctttaggggctcttagttaataagtttaagatcacaagtctgagtttgttgtacaagaaatgtattttcgatgtagaaaacaataaataatatgaaaat |
117 |
Q |
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| T |
39292035 |
cctttaggggctcttagttgataagtttaagatcacaagtcgaagtttgttgtacaagaaatgtattttcgatgtagaaaataataaataatatgaaaat |
39291936 |
T |
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| Q |
118 |
tgtattattatatatgtgagttacatacatagttcattcaataatcattaagatgcatattattctgtgaggcggatatgttatt---taggcaagtttt |
214 |
Q |
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| T |
39291935 |
tgtattattatatatgtgagttacatacatagttcattcaataatcattaagatgcatattattctgtgaggcagatatgttatttagtaggcaagtttt |
39291836 |
T |
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| Q |
215 |
tggaaca-----taaatgaacttctttgtatggagtttgactctactatttatagaaaagactaagaaactactaactcatacaatgcacgggtgtcaat |
309 |
Q |
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| T |
39291835 |
tggaacataaattaaatgaacttttttgtatggagtttgactctactatttatagaaaaaactaagaaactactaactcatacaatgcacgggtgtcaat |
39291736 |
T |
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| Q |
310 |
gtattcgaacttcctttg |
327 |
Q |
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| T |
39291735 |
gtattctaacttcctttg |
39291718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 268
Target Start/End: Complemental strand, 29456818 - 29456757
Alignment:
| Q |
207 |
caagtttttggaacataaatgaacttctttgtatggagtttgactctactatttatagaaaa |
268 |
Q |
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| T |
29456818 |
caagtttttggaacgaaaataaactcctttgcatgaagtttgattctactatttatagaaaa |
29456757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 40945572 - 40945507
Alignment:
| Q |
205 |
ggcaagtttt-tggaacataaatgaacttctttgtatggagtttgactctactatttatagaaaag |
269 |
Q |
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| T |
40945572 |
ggcaagttttgtggaacataaatgaactcctttgcatgaagtttgattctactattcataaaaaag |
40945507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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