View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11745_low_118 (Length: 332)

Name: NF11745_low_118
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11745_low_118
NF11745_low_118
[»] chr4 (5 HSPs)
chr4 (1-239)||(45734599-45734837)
chr4 (239-321)||(45734806-45734888)
chr4 (12-133)||(2462859-2462980)
chr4 (12-133)||(2485659-2485780)
chr4 (266-319)||(45745456-45745509)
[»] chr3 (2 HSPs)
chr3 (12-193)||(3079666-3079849)
chr3 (77-193)||(1730744-1730860)
[»] chr5 (5 HSPs)
chr5 (101-239)||(30047476-30047615)
chr5 (146-239)||(30067342-30067435)
chr5 (12-49)||(30047360-30047397)
chr5 (118-211)||(16598702-16598795)
chr5 (12-44)||(30067241-30067273)
[»] chr6 (5 HSPs)
chr6 (12-211)||(15566851-15567042)
chr6 (12-98)||(15565000-15565089)
chr6 (125-188)||(8855155-8855218)
chr6 (12-68)||(8855220-8855279)
chr6 (108-165)||(32925632-32925690)
[»] chr2 (1 HSPs)
chr2 (134-185)||(7468076-7468128)


Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 45734837 - 45734599
Alignment:
Q  1 atctgtgtgtcagttttaattcaagttagatggttttaactcaaattagagattaaaacatggttagaaagctggttacaagtttgttagatgacttata 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45734837 atctgtgtgttagttttaattcaagttagatggttttaactcaaattagagattaaaacatggttagaaagctggttacaagtttgttagatgacttata 45734738  T
Q  101 gctattagttagcaaattagttaagtttgttttgattgcttactaagcaagttatgtaaataagctctatataagcatgttgtaaatagtttttcaaagc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45734737 gctattagttagcaaattagttaagtttgttttgattgcttactaagcaagttatgtaaataagctctatataagcatgttgtaaatagtttttcaaagc 45734638  T
Q  201 ttaatgagaatacagttttacaacaatcaattactcttc 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  45734637 ttaatgagaatacagttttacaacaatcaattactcttc 45734599  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 239 - 321
Target Start/End: Original strand, 45734806 - 45734888
Alignment:
Q  239 catctcactcgaattaaaactgacacacagatgctcacgaaatggcttcatcagctcgtgtgatagtgagaaagaagacatct 321  Q
    ||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45734806 catctaacttgaattaaaactaacacacagatgctcacgaaatggcttcatcagctcgtgtgatagtgagaaagaagacatct 45734888  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 2462980 - 2462859
Alignment:
Q  12 agttttaattcaagttagatggttttaactcaaattag---agattaaaacatggttagaaagctggttacaagtttgttagatgacttatagctattag 108  Q
    ||||||||||||||||||||||||| ||||||| |||    ||| |||||||||||||||||| | ||||||||||||| ||||||||  | ||||||||    
T  2462980 agttttaattcaagttagatggttt-aactcaatttaattaagagtaaaacatggttagaaagtttgttacaagtttgtaagatgact--tggctattag 2462884  T
Q  109 ttagcaaattagttaagtttgtttt 133  Q
    ||||||| |||||||| ||||||||    
T  2462883 ttagcaagttagttaattttgtttt 2462859  T

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Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 2485780 - 2485659
Alignment:
Q  12 agttttaattcaagttagatggttttaactcaaattag---agattaaaacatggttagaaagctggttacaagtttgttagatgacttatagctattag 108  Q
    ||||||||||||||||||||||||| ||||||| |||    ||| |||||||||||||||||| | ||||||||||||| ||||||||  | ||||||||    
T  2485780 agttttaattcaagttagatggttt-aactcaatttaattaagagtaaaacatggttagaaagtttgttacaagtttgtaagatgact--tggctattag 2485684  T
Q  109 ttagcaaattagttaagtttgtttt 133  Q
    ||||||| |||||||| ||||||||    
T  2485683 ttagcaagttagttaattttgtttt 2485659  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 266 - 319
Target Start/End: Original strand, 45745456 - 45745509
Alignment:
Q  266 cagatgctcacgaaatggcttcatcagctcgtgtgatagtgagaaagaagacat 319  Q
    |||||||| | ||||||||||||||| |||||||||||||||||||||||||||    
T  45745456 cagatgctgatgaaatggcttcatcacctcgtgtgatagtgagaaagaagacat 45745509  T

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Target: chr3 (Bit Score: 109; Significance: 8e-55; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 12 - 193
Target Start/End: Complemental strand, 3079849 - 3079666
Alignment:
Q  12 agttttaattcaagttagatggttttaactcaaattag---agattaaaacatggttagaaagctggttacaagtttgttagatgacttatagctattag 108  Q
    ||||||||||||||||||||||||||||||||| ||||   ||| |||||||||||||||||| | |||||||||| |||||||||||||  |||| |||    
T  3079849 agttttaattcaagttagatggttttaactcaagttagttaagagtaaaacatggttagaaagtttgttacaagttagttagatgactta--gctactag 3079752  T
Q  109 ttagcaaattagttaagtttgttt-tgattgcttactaagcaagttatgtaaataagctctatataagcatgttgtaaatagtttt 193  Q
    |||||||||||||||||||||||| |||||||||||||||| ||| |||| |||||||||||||||||||||| |||| |||||||    
T  3079751 ttagcaaattagttaagtttgtttgtgattgcttactaagctagtcatgtgaataagctctatataagcatgtcgtaactagtttt 3079666  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 77 - 193
Target Start/End: Complemental strand, 1730860 - 1730744
Alignment:
Q  77 tacaagtttgttagatgacttatagctattagttagcaaattagttaagtttgttttg--attgcttactaagcaagttatgtaaataagctctatataa 174  Q
    |||||||| |||||||||||||  |||| |||||||||| ||||||||||| |||||   ||||||| |||||||||| |||| ||||||||||| ||||    
T  1730860 tacaagttagttagatgactta--gctactagttagcaagttagttaagttagttttctcattgcttgctaagcaagtcatgtgaataagctctagataa 1730763  T
Q  175 gcatgttgtaaatagtttt 193  Q
    ||||||||||| |||||||    
T  1730762 gcatgttgtaactagtttt 1730744  T

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Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 101 - 239
Target Start/End: Original strand, 30047476 - 30047615
Alignment:
Q  101 gctattagttagcaaatt-agttaagtttgttttgattgcttactaagcaagttatgtaaataagctctatataagcatgttgtaaatagtttttcaaag 199  Q
    |||||||||||||||| | |||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||| |     
T  30047476 gctattagttagcaaaatcagttcagtttgttttgattgcttactaagcaagctatgtaaataagctctttataagcatgttgtaaatattttttcacaa 30047575  T
Q  200 cttaatgagaatacagttttacaacaatcaattactcttc 239  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  30047576 cttaatgagaatacaattttacaacaatcaattactcttc 30047615  T

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Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 146 - 239
Target Start/End: Original strand, 30067342 - 30067435
Alignment:
Q  146 agcaagttatgtaaataagctctatataagcatgttgtaaatagtttttcaaagcttaatgagaatacagttttacaacaatcaattactcttc 239  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||| | ||||||||||||| ||||||||||||||||||||| ||||    
T  30067342 agcaagttatgtaaataagcactatataagcatgttgtaaatagattttcacaacttaatgagaatatagttttacaacaatcaattacgcttc 30067435  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 30047360 - 30047397
Alignment:
Q  12 agttttaattcaagttagatggttttaactcaaattag 49  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  30047360 agttttaattcaagttagatggttttaactcaagttag 30047397  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 211
Target Start/End: Complemental strand, 16598795 - 16598702
Alignment:
Q  118 tagttaagtttgttttgattgcttactaagcaagttatgta--aataagctctatataagcatgttgtaaatagtttttcaaagcttaatgagaat 211  Q
    ||||||||||||||| ||||||| | |||||||| |||||   |||||||||||||||||   |||||||| || |||||| | ||||||||||||    
T  16598795 tagttaagtttgttt-gattgctaaataagcaagctatgtgtgaataagctctatataagttagttgtaaacag-ttttcacaacttaatgagaat 16598702  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 44
Target Start/End: Original strand, 30067241 - 30067273
Alignment:
Q  12 agttttaattcaagttagatggttttaactcaa 44  Q
    |||||||||||||||||||||| ||||||||||    
T  30067241 agttttaattcaagttagatgggtttaactcaa 30067273  T

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Target: chr6 (Bit Score: 99; Significance: 8e-49; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 12 - 211
Target Start/End: Complemental strand, 15567042 - 15566851
Alignment:
Q  12 agttttaattcaagttagatggttttaactcaaattag---agattaaaacatggttagaaagctggttacaagtttgttagatgacttatagctattag 108  Q
    ||||||||||||||||| ||||||||||||||| ||||   |||||||||||||||||||||| |||||| |||||||||||||||||  ||||||||||    
T  15567042 agttttaattcaagttaaatggttttaactcaagttagttgagattaaaacatggttagaaagttggttaaaagtttgttagatgact--tagctattag 15566945  T
Q  109 ttagcaaattagttaagtttgttttgattgcttactaagcaagttatgtaaataagctc--tatataagcatgttgtaaatagtttttcaaagcttaatg 206  Q
    ||| |||||||||||||||||||||||||           |||||||||||||||||||  ||||||||||||||||||||||||||| || | ||||||    
T  15566944 ttaacaaattagttaagtttgttttgatt-----------aagttatgtaaataagctctatatataagcatgttgtaaatagtttttaaaggtttaatg 15566856  T

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Target: chr6; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 15565089 - 15565000
Alignment:
Q  12 agttttaattcaagttagatggttttaactcaaatta---gagattaaaacatggttagaaagctggttacaagtttgttagatgactta 98  Q
    ||||||||||||||||||||||||||||||||| |||   ||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  15565089 agttttaattcaagttagatggttttaactcaagttacttgagattaaaacatggttagaaagttggttacaagttttttagatgactta 15565000  T

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Target: chr6; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 125 - 188
Target Start/End: Complemental strand, 8855218 - 8855155
Alignment:
Q  125 gtttgttttgattgcttactaagcaagttatgtaaataagctctatataagcatgttgtaaata 188  Q
    ||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  8855218 gtttgttttgatttcttactaagcaagctatataaataagctctatataagcatgttgtaaata 8855155  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 8855279 - 8855220
Alignment:
Q  12 agttttaattcaagttagatggttttaactcaaatta---gagattaaaacatggttaga 68  Q
    ||||||||||||||||||||||||||||||||  |||   ||||||||| ||||||||||    
T  8855279 agttttaattcaagttagatggttttaactcatgttagttgagattaaatcatggttaga 8855220  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 165
Target Start/End: Complemental strand, 32925690 - 32925632
Alignment:
Q  108 gttagcaaa-ttagttaagtttgttttgattgcttactaagcaagttatgtaaataagc 165  Q
    ||||||||| |||||||  ||||||||||||||||| ||||||||| |||| |||||||    
T  32925690 gttagcaaagttagttagttttgttttgattgcttagtaagcaagtaatgttaataagc 32925632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 134 - 185
Target Start/End: Complemental strand, 7468128 - 7468076
Alignment:
Q  134 gattgcttactaagcaagttatgtaaataagctctatat-aagcatgttgtaa 185  Q
    |||||||||||||||||||||||| ||||||| |||||| |||||||||||||    
T  7468128 gattgcttactaagcaagttatgtgaataagccctatataaagcatgttgtaa 7468076  T

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