View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11745_low_119 (Length: 330)

Name: NF11745_low_119
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11745_low_119
NF11745_low_119
[»] chr8 (1 HSPs)
chr8 (18-312)||(2097568-2097859)


Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 312
Target Start/End: Original strand, 2097568 - 2097859
Alignment:
Q  18 aaattgagtatagcaacaatgtttggtaaaatgattgtcaatgctgcgaaggacacagcacatgtaagaccgtacatgagtgagattggaaacaaggttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2097568 aaattgagtatagcaacaatgtttggtaaaatgattgtcaacgctgcgaaggacacagcacatgtaagaccgtacatgagtgagattggaaacaaggttt 2097667  T
Q  118 caatagtgatatgatctggtataagtaggatggaaaaaatccagagtaagaaaaatatcaaaactgcagctacaacccaaggagtatactgttttgcgaa 217  Q
    |||||||||||||||||||||||||   ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2097668 caatagtgatatgatctggtataag---gatggaaaaaatccaaagtaagaaaaatatcaaaactgcagctacaacccaaggagtatactgttttgcgaa 2097764  T
Q  218 tagcgtttcgccaatctttgtgaacttgagtgttaccaatgcaaccaaaagtgcaaacattttgtaaatgatgtctcctaagtctttaatcacct 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2097765 tagcgtttcgccaatctttgtgaacttgagtgttaccaatgcaaccaaaagtgcaaacattttgtaaatgatgtctcctaagcctttaatcacct 2097859  T

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