View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_12 (Length: 651)
Name: NF11745_low_12
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 579; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 17 - 641
Target Start/End: Complemental strand, 44436955 - 44436327
Alignment:
| Q |
17 |
aggtttttaccttgtcatgttaaggttaacaagggtggaaactcggtcat--cacaatctcttcatctctcctcactggagttcttagagataaatattt |
114 |
Q |
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| T |
44436955 |
aggtttttaccttgccatgttaaggttaacaagggtggaaactcagtcatgtcacaatctcttcatctctcctcactggagttcttagagataaatattt |
44436856 |
T |
|
| Q |
115 |
ttcaagaagcggctttttggaggacaacctcgatctgttacacatagacaagtatttggagtattgtatcgccgttgtcctttagatatacgtgggaaat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44436855 |
ttcaagaagcggctttttggaggacaacctcgatctgttacacatagagaagtatttggagtattgtatcgccgttgtcctttagatatacgtgggaaat |
44436756 |
T |
|
| Q |
215 |
tggtgaaggaaatggtatcaggtcagacccttggatctggttaacacagtatatgcagcctactgccccgagtgtgttatgtgtcatgggagttttgatg |
314 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44436755 |
tggtgaaggaaatggcatcaggtcagacccttggatctggtcaacgcagtatatgcagcctactgccccgagtgtgttatgtgtcatgggagttttgatg |
44436656 |
T |
|
| Q |
315 |
ataagttgcacactttccttgaatgctctcgttttgttaattgttagaaggaattgcatatgtggactataatcaagcatcactttaccggtaggcaatt |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44436655 |
ataagttgcacactttccttgaatgctctcgttttgttaattgttagaaggaattgcatatgtggactataatcaagcatcactttaccggtaggcaatt |
44436556 |
T |
|
| Q |
415 |
tttgttttcccatcattttatctattgtgcaggccttg--gtggtgagaaaaaatcacgcttctaatctagcctttgaagtatactgttacgcagctgct |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44436555 |
tttgttttcccatcattttatctattgtgcaggccttggtgtggtgagaaaaaatcacgcttctaatctagcctttgaagtatactgttacgcagctgct |
44436456 |
T |
|
| Q |
513 |
ttaggaggcttcaaatgttagtatggcaaaaagatatatagaggaaaatcaatagagatgtatgtagaattgtggtagagcatcatcctcatagaagatg |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44436455 |
ttaggaggcttcaaatgttagtatggcaaaaagatatatagaggaaaatcaatagagatgtatgtagaattgtggtagagcatcttcctcatagaagatg |
44436356 |
T |
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| Q |
613 |
acattcgcagcaaaaaatacgttcctatg |
641 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
44436355 |
acattcgcagcaaaaaatacgttcctatg |
44436327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 66 - 134
Target Start/End: Original strand, 2901595 - 2901663
Alignment:
| Q |
66 |
tcacaatctcttcatctctcctcactggagttcttagagataaatatttttcaagaagcggctttttgg |
134 |
Q |
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|||||| |||||| | |||||||||| ||||||| | |||||||||||| | |||||| ||||||||| |
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| T |
2901595 |
tcacaaactcttcctttctcctcactagagttctcaaagataaatatttccctagaagcagctttttgg |
2901663 |
T |
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