View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11745_low_120 (Length: 329)

Name: NF11745_low_120
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11745_low_120
NF11745_low_120
[»] chr7 (3 HSPs)
chr7 (129-218)||(4793617-4793706)
chr7 (61-134)||(4793500-4793574)
chr7 (248-305)||(4793715-4793772)
[»] chr8 (1 HSPs)
chr8 (5-53)||(8638997-8639045)


Alignment Details
Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 4793617 - 4793706
Alignment:
Q  129 tttcaacaaaagatgagactgttacatggagatgccacatgagcagaatgcaagagaaagaataagtcaagttcattttacattgagaag 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4793617 tttcaacaaaagatgagactgttacatggagatgccacatgagcagaatgcaagagaaagaataagtcaagttcattttacatagagaag 4793706  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 61 - 134
Target Start/End: Original strand, 4793500 - 4793574
Alignment:
Q  61 ggctaataagtgaaccgttttttctccc-atacatgaattgttatttacttgattgtgtatgtagcatatttcaa 134  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4793500 ggctaataagtgaaccgttttttctccccatacatgaattgttatttacttgattgtgtatgtagcatatttcaa 4793574  T

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Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 248 - 305
Target Start/End: Original strand, 4793715 - 4793772
Alignment:
Q  248 tattgggaacactgttccaaccctttagattcgttgcatactatgcaagtgatttcaa 305  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4793715 tattgggaacactgttccaaccgtttagattcgttgcatactatgcaagtgatttcaa 4793772  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 8639045 - 8638997
Alignment:
Q  5 caatcctaacattagaataaataaagtttagaattcaaagatatataga 53  Q
    |||||||| |||| |||| | | ||||||||||||||||||||||||||    
T  8639045 caatcctagcatttgaatgagttaagtttagaattcaaagatatataga 8638997  T

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