View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_126 (Length: 313)
Name: NF11745_low_126
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_126 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 15 - 299
Target Start/End: Complemental strand, 22192477 - 22192192
Alignment:
| Q |
15 |
atgaacgattcactttgcttacctaagcaagttaccctaaatagtgcacgataaccatatatttaaagaaacaaaaggaaataccatcagtttctgaaga |
114 |
Q |
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| T |
22192477 |
atgaacgattcgctttgctt-cctaagcaagttaccctaaatagtgcacgataaccatatatttaaagaaacaaaaggaaataccatcagtttctgaaga |
22192379 |
T |
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| Q |
115 |
aaggagggtgagaaaagcaataga-aaaagtagaagatatctgcacttactaacaaaaaatggaatcccgtgacattgttgaagatggtaatgatgcgtc |
213 |
Q |
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| T |
22192378 |
aaggagggtgagaaaagcaatagaaaaaagtagaagatatcttcacttactaacaaaaaatggaatcccgtgacattgttgaagatggtaatgatgcgtc |
22192279 |
T |
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| Q |
214 |
aaaactatatacaaaacaatt-tttacactaaagccgatttctcgacatcaccattctttcgtcattggagttggagagtgtaaatg |
299 |
Q |
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| T |
22192278 |
aaaactatatacaaaacaattgtttacactaaagccgatttctcgacatcgccattctttcgtcattggagttggagagtgtaaatg |
22192192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 255
Target Start/End: Original strand, 13684005 - 13684084
Alignment:
| Q |
177 |
aatcccgtgacattgttgaagatggtaatgatgcgtcaaaactatatacaaaacaatt-tttacactaaagccgatttct |
255 |
Q |
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| T |
13684005 |
aatcccatgacattgttgaagattataatgatgcgtcaaaactatatattaaagagttgttgacactaaagccgatttct |
13684084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 189 - 299
Target Start/End: Complemental strand, 8598850 - 8598739
Alignment:
| Q |
189 |
ttgttgaagatggtaatgatgcgtcaaaactatatacaaaacaat-ttttacactaaagccgatttctcgacatcaccattctttcgtcattggagttgg |
287 |
Q |
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| T |
8598850 |
ttgttgaagatggtaatgatgcgtcaaaactatatccaaaaaaatcgttcacagtaaagccgatttctggatttgacgattcatttgtctttggacttgg |
8598751 |
T |
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| Q |
288 |
agagtgtaaatg |
299 |
Q |
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| T |
8598750 |
agagtataaatg |
8598739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 255
Target Start/End: Complemental strand, 36996211 - 36996129
Alignment:
| Q |
174 |
tggaatcccgtgacattgttgaagatggtaatgatgcgtcaaaactatatac-aaaacaatttttacactaaagccgatttct |
255 |
Q |
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| T |
36996211 |
tggaatcccataacattgttgaagatggaaataatgtgtcaaaactatatacgaaaacattgttgacactaaagccgatttct |
36996129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 20016044 - 20016003
Alignment:
| Q |
40 |
agcaagttaccctaaatagtgcacgataaccatatatttaaa |
81 |
Q |
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| T |
20016044 |
agcaagttaccctaaatagtgcatgataaccataaatttaaa |
20016003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 81
Target Start/End: Complemental strand, 20035183 - 20035146
Alignment:
| Q |
44 |
agttaccctaaatagtgcacgataaccatatatttaaa |
81 |
Q |
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| T |
20035183 |
agttaccctaaatagtgcacgataaccatacatttaaa |
20035146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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