View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_130 (Length: 307)
Name: NF11745_low_130
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_130 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 16 - 289
Target Start/End: Complemental strand, 24437472 - 24437199
Alignment:
| Q |
16 |
gacatcattgtcggtgcgtcctggcagctgcgctgctatcagagaccatctgaacaaccatttaagcaaatcattaacaatgtgataaagagaatctcat |
115 |
Q |
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| T |
24437472 |
gacatcattgtcggtgcgtcctggcagctgcgctgctatcagagaccatctgaacaaccatttaagcaaatcattaacaatgtgaaaaagagaatctcat |
24437373 |
T |
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| Q |
116 |
acactatgaataacataacataaccttaatgcatagataacatttgtggtacctgttaccaaaaactgaatgaagcttcacaattgtttgctcttctcca |
215 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24437372 |
acactacgaataacataacataaccttaatgcatagataacatttgtggtacctgttaccaaaaactgaatgaagcttcacaattgtttgctcttctcca |
24437273 |
T |
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| Q |
216 |
tccgagaaatggccatgtttcagatcagggcgaaggtaattagtccaccttagcctgcagctctttccacatct |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24437272 |
tccgagaaatggccatgtttcagatcagggcgaaggtaattagtccaccttagcctgcagctctttccacatct |
24437199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 31999949 - 31999905
Alignment:
| Q |
246 |
cgaaggtaattagtccaccttagcctgcagctctttccacatctt |
290 |
Q |
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| T |
31999949 |
cgaaggtagttagtccatcttagtctgcagctctttccacatctt |
31999905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 291
Target Start/End: Complemental strand, 31939648 - 31939606
Alignment:
| Q |
249 |
aggtaattagtccaccttagcctgcagctctttccacatcttg |
291 |
Q |
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| T |
31939648 |
aggtagttagtccatcttagtctgcagctctttccacatcttg |
31939606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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