View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11745_low_131 (Length: 305)
Name: NF11745_low_131
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_131 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 16 - 298
Target Start/End: Original strand, 38343878 - 38344160
Alignment:
| Q |
16 |
cacacacttcaccattcatccaagatggagaacatccagcacagtcatgtagaagtgaagggactaaagctccatgtagctgagatcggaactggtatca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38343878 |
cacacacttcaccattcatccaagatggagaacatccagcacagtcatgtagaagtgaagggactaaagctccatgtagctgagatcggaactggtatca |
38343977 |
T |
|
| Q |
116 |
actccctcatatcataaacttttcttggttgatttgtttctaaactctgaagtacaacaacattttttatttgtgcaggtgaaaaggtagtggttttctt |
215 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38343978 |
actctatcatatcataaacttttcttggttgatttgtttctaaactctgaagtacaacaacattttttatctgtgcaggtgaaaaggtagtggttttctt |
38344077 |
T |
|
| Q |
216 |
gcatggattcccagaaatatggtatacttggagataccaaatgattgctgttgcagatgctggataccgtgctattgcctttg |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38344078 |
gcatggattcccagaaatatggtatacttggagataccaaatgattgctgttgcaaatgctggataccgtgctattgcctttg |
38344160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 15 - 303
Target Start/End: Original strand, 38348967 - 38349252
Alignment:
| Q |
15 |
tcacacacttcaccattcatccaagatggagaacatccagcacagtcatgtagaagtgaagggactaaagctccatgtagctgagatcggaactggtat- |
113 |
Q |
| |
|
|||||||||||| | |||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
38348967 |
tcacacacttcatctagcatcaaagatggataacatccaacacagtcatgtagaagtgaagggactgaagctccatgtagctgagattggaactggtata |
38349066 |
T |
|
| Q |
114 |
-caactccctcatatcataaacttttcttggttgatttgtttctaaactctgaagtacaacaacattttttatttgtgcaggtgaaaaggtagtggtttt |
212 |
Q |
| |
|
|||| |||| |||||| ||| | ||| || |||||| ||||| ||| | | || ||||| | ||| |||||| ||||||||| | ||||||||| |
|
|
| T |
38349067 |
ccaacacccttatatcagaaaatattcatgattgattcgtttcgaaagtat----tataacaaaaaatttg-tttgtgtaggtgaaaaagcagtggtttt |
38349161 |
T |
|
| Q |
213 |
cttgcatggattcccagaaatatggtatacttggagataccaaatgattgctgttgcagatgctggataccgtgctattgcctttgcttct |
303 |
Q |
| |
|
| | |||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||| |
|
|
| T |
38349162 |
catacatggattcccagaaatatggtatacatggcgataccaaatgattgctgttgcaaatgctggataccgtgctatagcctttgattct |
38349252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University