View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11745_low_136 (Length: 297)
Name: NF11745_low_136
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_136 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 15 - 273
Target Start/End: Original strand, 46464449 - 46464707
Alignment:
| Q |
15 |
atgaacaatagagggattactgggagggagggtcctggcattttgaatcccaagatgtttgtgtccaaggttgtgctttgttgtatgctgaaagtttgaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46464449 |
atgaacaatagagggattactgggagggagggtcctggcattttgaatcccaagatgtttgtgtccaaggttgtgctttgttgtatgctgaaagtttgaa |
46464548 |
T |
|
| Q |
115 |
gctgtgctaaacatgtgttcataaatattgtgcttaatatgattggtagcattcggactaggatttttgtttcttctacttgtgtcactgtgcaaagatt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46464549 |
gctgtgctaaacatgtgttcataaatattgtgcttaatatgattggtagcattcggactaggatttttgtttcttctacttgtgtcactgtgcaaagatt |
46464648 |
T |
|
| Q |
215 |
ccatgatcctgtactgtttcccccaactgctgctctgtctaagaatctgagaatccatt |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46464649 |
ccatgatcctgtactgtttcccccaactgctgctctgtctaagaatctgagaatccatt |
46464707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 219
Target Start/End: Original strand, 37982445 - 37982556
Alignment:
| Q |
108 |
gtttgaagctgtgctaaacatgtgttcataaatattgtgcttaatatgattggtagcattcggactaggatttttgtttcttctacttgtgtcactgtgc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||| ||| | || |||| ||||| |||||||||| |||||| |||||||||||||||| |
|
|
| T |
37982445 |
gtttgaagctgtgctaaacatgtgttcattacaattgtacttgccaatataggtaacattcttgttaggatttttacttcttcaacttgtgtcactgtgc |
37982544 |
T |
|
| Q |
208 |
aaagattccatg |
219 |
Q |
| |
|
||| ||||||| |
|
|
| T |
37982545 |
aaaccttccatg |
37982556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University