View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11745_low_139 (Length: 289)
Name: NF11745_low_139
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_139 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 56007910 - 56008188
Alignment:
| Q |
1 |
tatatcagagagaacagccaaggcagaatcacagatgaaggtagttatctgactcgtttttctttccgtgtaagcatctaaatcaattttcaatgtttta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
56007910 |
tatatcagagagaacagccaaggcagaatcacagatgaaggtatttatctgactcgtttttctttccgtgtaagcatctaaatcaattttcaacgtttta |
56008009 |
T |
|
| Q |
101 |
tttggtgtttacttcaggaaaaactaaaagtgagactaaaaacactggaggaaggtttaaaacattcttcaatttctaaagcagaaaagtctaacatcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
56008010 |
tttggtgtttacttcaggaaaaactaaaagtgagactaaaaacactggaggaaggtttaaaacattcttcaatttcaaaagcagaaaagtctaacatcat |
56008109 |
T |
|
| Q |
201 |
aagttccccaacagcaagtggtggtccaaaaaagagatccacatcacaaccaagagcatctgcgatttggagccctttg |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
56008110 |
aagttccccaacagcaagtggtggtccaaaaaagagatccacatcacaaccaagagcatctgcgattgggagtcctttg |
56008188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University