View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_143 (Length: 281)
Name: NF11745_low_143
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_143 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 41230352 - 41230075
Alignment:
| Q |
1 |
ttatagtgtgttattcaaaaagtatagaaagtagtcatggtggtagtaataatcatggtcgcatttagtcccttaattttgtacctgccgtcaagttata |
100 |
Q |
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| T |
41230352 |
ttatagtgtgttattcaaaaagtatagaaagtagtaatggtggtagtaataatcatggtcgcatttagtcccttaattttgtacctgccgtcaagttata |
41230253 |
T |
|
| Q |
101 |
atgaggtgtatg---cttgccaagtagaagaactgg-aagtggtctaccattattattttagatagaggtacgtgttggctagattgagttagttaagtt |
196 |
Q |
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|||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
41230252 |
atgaggtgtatgatgcttgccaagtagaagaactgggaagtggtctcccattattattttatatacaggtacgtgttggctagattgagttagttaagtt |
41230153 |
T |
|
| Q |
197 |
taaagtgaaaatatattggaattggagttggtgcttcttaacccaagccgtccatttggtggttcctcccttcctttg |
274 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41230152 |
taaagtgaaaatatattggaattgtagttggtgcttcttaacccaagccgtccatttggtggttcctcccttcctttg |
41230075 |
T |
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