View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11745_low_144 (Length: 279)

Name: NF11745_low_144
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11745_low_144
NF11745_low_144
[»] chr2 (1 HSPs)
chr2 (7-279)||(27758616-27758900)


Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 279
Target Start/End: Original strand, 27758616 - 27758900
Alignment:
Q  7 gatgtagatcaattcatgaaggattcggtagaaacagcaaagaagaaccccgata------------caacttccacacaaagggtccagcctatagcaa 94  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||            |||||||||||||||||||||||||||||||||    
T  27758616 gatgtagatcaatacatgaaggattcggtagaaatagcaaagaagaaccccgatacaacaaatgatacaacttccacacaaagggtccagcctatagcaa 27758715  T
Q  95 cacagtaggaggattttgttccagaaacgcagctcaagcagcctcctttgcggttgtcacttcgcatagatggccaataatgcaaaaggaccttaaattg 194  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||| |||||    
T  27758716 cacagcaggaggattttgttccagaaacgcagctcaagcagcctcctttgtggttgtcacttcgcatagatgaccaataatgcaaaaggaacttgaattg 27758815  T
Q  195 atcaagccttctttggctgctcaaaaaagatgacaaggaagctcccttcacactgtatttgaccgagaatcagcctatcataccc 279  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||    
T  27758816 atcaagccttctttggctgctcaaaaaagatgacaaggaagctctcttcacactgtatttgactaagaatcagcctatcataccc 27758900  T

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