View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_15 (Length: 621)
Name: NF11745_low_15
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 3 - 601
Target Start/End: Complemental strand, 7804615 - 7804031
Alignment:
| Q |
3 |
aaaaagtgtaaaaaagagatcgagtgagtgagtgaatctatgggatcacacatagaggaaattatgtagagaatacgagtaaatgggtgtagaagatcta |
102 |
Q |
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| T |
7804615 |
aaaaagtgtaacaaagagatcgagtgagtgagtgaatctatgagatcaaacattgaggaaattacgtagagaatacgagtaaatgggtgttgaagatcta |
7804516 |
T |
|
| Q |
103 |
aacacatgaatttttaatgtagaagctcaacattactttccatcgtagagaaactaaaaataattacatgtcactgtatactttgttatacaa-gtttga |
201 |
Q |
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||||| ||||||| | ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
7804515 |
aacacgtgaatttcttatgtagaagttcaacattattttccatcgtagagaaactaaaaataattacatgtcactatatactttgttatacaatgtttga |
7804416 |
T |
|
| Q |
202 |
attacattttcattggcaagcattttgatgtaattgcatatcaattgatatttctaatcatgttttacttttaaggaatttactcttnnnnnnnctttaa |
301 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
7804415 |
attacattctcattggcaagcattttgatgtaattgcatatcaattgatatttctaatcatgttttacttttaaggaatttactcttaaaaaaacttaaa |
7804316 |
T |
|
| Q |
302 |
aggaatttaatacaccacttatagtgattaattatgtaagtttatgagatatatgaaagaacattataactatgacgtaatttgattgaagtaaccaatc |
401 |
Q |
| |
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||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||| ||| |
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| T |
7804315 |
aggaatttaatgcaccacttatagtg----attatgtaagtttctgagatatatgaaagaacatta--------------------tgaagtaaccgatc |
7804240 |
T |
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| Q |
402 |
ttatttaacaaaataaagtttggttgttgctgtattcatcgtggatctattttggagtgaataaattatggttgagaaagctaacaaaaatcttgatgcc |
501 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7804239 |
ttatttaacaaaataaagtttggttgttgttgtattcatcgtggatctattttggagtgaataaattatggttgagaaagctaacaaaaatcttgatgcc |
7804140 |
T |
|
| Q |
502 |
at-----gacttccctaacacaacagttatgacttgag----caaaaattaaaacaacggttatgataaagagaattaagttgaagacaaattttggtgg |
592 |
Q |
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|| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7804139 |
atgagtagacttccctaacacaacagttatgacttgagaaaaaaaaaattaaaaccacggttatgataaagagaattaagttgaagacaaattttggtgg |
7804040 |
T |
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