View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11745_low_151 (Length: 267)
Name: NF11745_low_151
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_151 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 257
Target Start/End: Original strand, 31251247 - 31251487
Alignment:
| Q |
17 |
aagattatcaatcttattttctagcaaacatcaatatcagttcttttctatctttcctttaacaccatgaagatcttcattctctttggtatcacctttg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31251247 |
aagattatcaatcttattttctagcaaacatcaatatcagttcttttctatctttcctttaacaccatgaagatctccattctctttggtatcacctttg |
31251346 |
T |
|
| Q |
117 |
catgtggctttttaggaagcattatttcaaatgctaatcctctaccgtatgaagccatattcaactttggcgactctacaagtgataccggaaatgctgc |
216 |
Q |
| |
|
||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31251347 |
catgtggcttttttggaaactttatttcaaatgctaatcctctaccgtatgaagccatattcaactttggcgactctacaagtgataccggaaatgctgc |
31251446 |
T |
|
| Q |
217 |
atttgatcacctcaatgttatggaaaaattaattccctatg |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31251447 |
atttgatcacctcaatgttatggaaaaattaattccctatg |
31251487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 256
Target Start/End: Complemental strand, 13004323 - 13004084
Alignment:
| Q |
17 |
aagattatcaatcttattttctagcaaacatcaatatcagttcttttctatctttcctttaacaccatgaagatcttcattctctttggtatcacctttg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13004323 |
aagattatcaatcttattttctagcaaacatcaatatcagttcttttctatctttcctttaacaccatgaagatctacattctctttggtatcacctttg |
13004224 |
T |
|
| Q |
117 |
catgtggctttttaggaagcattatttcaaatgctaatcctctaccgtatgaagccatattcaactttggcgactctacaagtgataccggaaatgctgc |
216 |
Q |
| |
|
||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13004223 |
catgtggcttttttggaaactttatttcaaatgctaatcctctaccgtatgaagccatattcaactttggcgactctacaagtgataccggaaatgctgc |
13004124 |
T |
|
| Q |
217 |
atttgatcacctcaatgttatggaaaaattaattccctat |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13004123 |
atttgatcacctcaatgttatggaaaaattaattccctat |
13004084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 31095142 - 31094939
Alignment:
| Q |
20 |
attatcaatcttattttctagcaaacatcaatatcagttcttttctatctttcctttaacaccatgaagatcttcattctctttggtatcacctttgcat |
119 |
Q |
| |
|
|||||||||| ||||||||||| |||| ||||||| | |||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
31095142 |
attatcaatcacattttctagcatacatgaatatcattcctttgctatctttcttttaacaccatgaagattttcattctctttggtatcacctttgcat |
31095043 |
T |
|
| Q |
120 |
gtggctttttaggaagcattatttcaaatgctaatcctctaccgtatgaagccatattcaactttggcgactctacaagtgataccggaaatgctgcatt |
219 |
Q |
| |
|
|||||||||| |||| | | ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
31095042 |
gtggcttttttggaaacttcatttcaaatgctaatcctctaccgtatgaagccatcttcaactttggtgactctataagtgataccggaaatgctgcatt |
31094943 |
T |
|
| Q |
220 |
tgat |
223 |
Q |
| |
|
|||| |
|
|
| T |
31094942 |
tgat |
31094939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 46 - 221
Target Start/End: Original strand, 16162013 - 16162184
Alignment:
| Q |
46 |
atcaatatcagttcttttctatctttcctttaacaccatgaagatcttcattctctttggtatcacctttgcatgtggctttttaggaagcattatttca |
145 |
Q |
| |
|
||||||||||||||||| ||||| || ||| |||||||||||| |||||||||||| |||| |||||||||||||| |||||| || || |||| |
|
|
| T |
16162013 |
atcaatatcagttctttgttatctatcatttc-caccatgaagattttcattctctttagtattacctttgcatgtggatttttaaaaa---ttgtttct |
16162108 |
T |
|
| Q |
146 |
aatgctaatcctctaccgtatgaagccatattcaactttggcgactctacaagtgataccggaaatgctgcatttg |
221 |
Q |
| |
|
||||||||||||||||| ||||||||||| || |||||||| |||||||||||||| |||||||| ||||| |||| |
|
|
| T |
16162109 |
aatgctaatcctctaccatatgaagccatctttaactttggtgactctacaagtgacaccggaaacgctgcttttg |
16162184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University