View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_158 (Length: 263)
Name: NF11745_low_158
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_158 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 4 - 250
Target Start/End: Complemental strand, 36675965 - 36675719
Alignment:
| Q |
4 |
ctaattttgtagctactattggtgaaaaagttggtgagattcaatcttgcattgctgacatagaagtgacaatggtggaaaaccatgcaaatcttaaaat |
103 |
Q |
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| T |
36675965 |
ctaattctgtagctactattggtgaaaaagttggtgagattcaatcttgcattgctgacatagaagtgacaatggtggaaaaccatgcaaatcttaaaat |
36675866 |
T |
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| Q |
104 |
aagatcaagaaagaggccaaagcagctcttgaaaattgtatctggtttgcaaaacatgcgtctcacaatcttgcatttaaatgttactactactggtgaa |
203 |
Q |
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| T |
36675865 |
aagatcaagaaagaggccaaagcagctcttgaaaattgtatctggtttgcaaaacatgcgtctcacaatcttgcatttaaatgttactactattggtgaa |
36675766 |
T |
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| Q |
204 |
attgttctttactctctcagtgttaaggtttgtgtttgttatttctt |
250 |
Q |
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| T |
36675765 |
attgttctttactctctcagtgttaaggtttgtgtttgttatttctt |
36675719 |
T |
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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 232
Target Start/End: Original strand, 46922272 - 46922450
Alignment:
| Q |
54 |
attgctgacatagaagtgacaatggtggaaaaccatgcaaatcttaaaataagatcaagaaagaggccaaagcagctcttgaaaattgtatctggtttgc |
153 |
Q |
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|||||||| || ||||| |||||||| |||| |||||||||||| ||||||||| ||| || || ||||| ||||||||||| || || ||| |||||| |
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| T |
46922272 |
attgctgatattgaagttacaatggttgaaagccatgcaaatctcaaaataagaacaaagaaaagaccaaaacagctcttgaagatggtttctagtttgc |
46922371 |
T |
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| Q |
154 |
aaaacatgcgtctcacaatcttgcatttaaatgttactactactggtgaaattgttctttactctctcagtgttaaggt |
232 |
Q |
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| T |
46922372 |
atggattgtgtctcacaatcttgcaccttaatgtcactacagctgatgaatttgtcttctattctctcagcgttaaggt |
46922450 |
T |
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