View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11745_low_160 (Length: 261)
Name: NF11745_low_160
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_160 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 42799136 - 42798878
Alignment:
| Q |
1 |
tgtgattcattagaattatgtttgctttcatatttgcgaagtgcatgaccaatgattgtgctaaaatgtttgtacagtgcacaattttttcaatacagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42799136 |
tgtgattcattagaattatgtttgctttcatatttgcgaagtgcatgaccaatgattgtgctaaaatgtttgtacagtgcacaattttttcaatacagaa |
42799037 |
T |
|
| Q |
101 |
agggtctaagtccaaacaaaaagagaaattgcaccgaaactaatagaggagtagaaactcgtctactatcagaattgagcaactggaccaactgagtcag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42799036 |
agggtctaagtccaaacaaaaagagaaattgcaccgaaactaatagaggagaagaaactcgtctactatcagaattgagcaactggaccaactgagtcag |
42798937 |
T |
|
| Q |
201 |
acacaactcataaacagtcaaagcatcattatattctttgcttcatgatatgagtggcata |
261 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
42798936 |
acacaactc--aaacaatcaaagcatcattatattctttgcttcatgatacgagtggcata |
42798878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 28762754 - 28762528
Alignment:
| Q |
1 |
tgtgattcattagaattatgtttgctttcatatttgcgaagtgcatgaccaatgattgtgctaaaatgtttgtacagtgcacaattttttcaatacagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||| || |||||| |||||||||||||||||||||||||||||||||| || | |||| |||| || |
|
|
| T |
28762754 |
tgtgattcattagaattatgtttgttttcatccttatgaagtgaatgaccaatgattgtgctaaaatgtttgtacagttcatggtgttttgggtacaaaa |
28762655 |
T |
|
| Q |
101 |
-agggtctaagtccaaacaaaaagagaaattgcaccgaaactaatagaggagtagaaactcgtctactatcagaattgagcaactggaccaactgagtca |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||| ||||||||||||||| |||||| | | ||||||||||||| ||||||||||| |||||| |
|
|
| T |
28762654 |
gagggtctaagtccaaacaaaaagagaaattacatcgaatctaatagaggagtaggaactcgacgaatatcagaattgagaaactggaccaattgagtcg |
28762555 |
T |
|
| Q |
200 |
gacacaactcataaacagtcaaagcatca |
228 |
Q |
| |
|
|||||||||| ||||||||||||||||| |
|
|
| T |
28762554 |
gacacaactc--aaacagtcaaagcatca |
28762528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University