View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_164 (Length: 259)
Name: NF11745_low_164
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_164 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 33736123 - 33735879
Alignment:
| Q |
1 |
agtggaagaaagattatgcacattagtgaataactaattaaacacactagctnnnnnnnnctcttcacttgttattgaattcaagaactaaaagtgttcc |
100 |
Q |
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| T |
33736123 |
agtggaagaaagattatgcacattaatgaataactaattaaacacactagctaaaaaaaactcttgacttgttattgaattcaagaactaaaagtgttcc |
33736024 |
T |
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| Q |
101 |
gtgttcttgagtcagaagaatctctatcaaaatccataaacctcattagttgttgaaaatcagcttctccgatactatcccaaaaatcacaattcttatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33736023 |
atgttcttgagtcagaagaatctctatcaaaatccataaacctcattagttgttgaaaatcagcttctccgatactatcccaaaaatcacaattcttatt |
33735924 |
T |
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| Q |
201 |
actctcaaatcccatagttgtctcaatttgtatttcttgattcat |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33735923 |
actctcaaatcccatagttgtctcaatttgtatttcttgattcat |
33735879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 89 - 245
Target Start/End: Complemental strand, 33750847 - 33750691
Alignment:
| Q |
89 |
taaaagtgttccgtgttcttgagtcagaagaatctctatcaaaatccataaacctcattagttgttgaaaatcagcttctccgatactatcccaaaaatc |
188 |
Q |
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|||||||||||| ||||| || ||||||||||||| | ||||||||||||||||||| |||||||||||||||| ||| || | |||||||||||||| |
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| T |
33750847 |
taaaagtgttcccagttctggaatcagaagaatctccaccaaaatccataaacctcatcagttgttgaaaatcagtttccccaagcctatcccaaaaatc |
33750748 |
T |
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| Q |
189 |
acaattcttattactctcaaatcccatagttgtctcaatttgtatttcttgattcat |
245 |
Q |
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| T |
33750747 |
acaatccatattattcccaaatccaatatttgtctcactttgcatttcttgattcat |
33750691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 131 - 238
Target Start/End: Complemental strand, 33721327 - 33721214
Alignment:
| Q |
131 |
aatccataaacctcattagttgttgaaaatcagcttct---ccgatactatcccaaaaatcaca---attcttattactctcaaatcccatagttgtctc |
224 |
Q |
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|||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||| | || ||||| || |||||||||| |||||||| |
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| T |
33721327 |
aatccataaacctcataagttgttgaaaatcagcttcttccccaatactatcccaaaaatcacattcagtcgtattattcccaaatcccatcgttgtctc |
33721228 |
T |
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| Q |
225 |
aatttgtatttctt |
238 |
Q |
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|||||| ||||||| |
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| T |
33721227 |
aatttgcatttctt |
33721214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 113 - 245
Target Start/End: Complemental strand, 33719341 - 33719209
Alignment:
| Q |
113 |
cagaagaatctctatcaaaatccataaacctcattagttgttgaaaatcagcttctccgatactatcccaaaaatcacaattcttattactctcaaatcc |
212 |
Q |
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|||||||||||| | ||| ||||||||| |||| | |||||||||||||| ||| || || |||||| |||||||||||| ||||||| ||||||| || |
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| T |
33719341 |
cagaagaatctccagaaaattccataaacttcataaattgttgaaaatcaggttcaccaatgctatccaaaaaatcacaatccttattattctcaaaccc |
33719242 |
T |
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| Q |
213 |
catagttgtctcaatttgtatttcttgattcat |
245 |
Q |
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| | |||| |||||||| |||||||||||||| |
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| T |
33719241 |
cgtcattgtttcaatttgcatttcttgattcat |
33719209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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