View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_167 (Length: 255)
Name: NF11745_low_167
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_167 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 28927910 - 28928149
Alignment:
| Q |
1 |
ttaaatgggtatcgtaggtgatgatccctaaaaatgtcacaaactcatgcaacaccaaacatcgttttgaagacctgaaaaatagttttaagggcttata |
100 |
Q |
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| T |
28927910 |
ttaaatgggtatcgtaggtgatgatccctaaaaatgtcacaaactcatgcaacaccaaacatcgttttgaagacctgaaaaatagttttaagggcttata |
28928009 |
T |
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| Q |
101 |
actatgatcaagttagtagatcatgatcgtaatgataacatgcatattgatgttgaagttacctaa--atatatgcatgaaaattaccatgacctaaagt |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
28928010 |
actatgatcaagttagtagatcatgatcgtaatgataacatgc--attgatgttgaagatacctaaatatatatgcatgaaaattaccatgacctaaagt |
28928107 |
T |
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| Q |
199 |
ttgtgaaaatcttaagctgagactacataaagagcaaaatct |
240 |
Q |
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|||||| |||||| |||||||||||||||||||||||||||| |
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| T |
28928108 |
ttgtgagaatcttcagctgagactacataaagagcaaaatct |
28928149 |
T |
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