View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11745_low_168 (Length: 253)

Name: NF11745_low_168
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11745_low_168
NF11745_low_168
[»] chr4 (18 HSPs)
chr4 (17-253)||(56007518-56007748)
chr4 (160-229)||(18628568-18628644)
chr4 (156-217)||(32764906-32764967)
chr4 (184-231)||(19250546-19250593)
chr4 (156-236)||(4798584-4798664)
chr4 (156-191)||(46013370-46013405)
chr4 (156-220)||(46019663-46019731)
chr4 (184-239)||(52259631-52259686)
chr4 (156-190)||(19429559-19429593)
chr4 (184-229)||(30581702-30581747)
chr4 (184-236)||(2996573-2996625)
chr4 (184-236)||(16494823-16494875)
chr4 (185-229)||(17975394-17975438)
chr4 (178-218)||(27721711-27721751)
chr4 (184-240)||(36722683-36722739)
chr4 (184-236)||(44797886-44797938)
chr4 (156-188)||(46247183-46247215)
chr4 (184-236)||(55414438-55414490)
[»] chr2 (11 HSPs)
chr2 (156-229)||(28677684-28677757)
chr2 (161-220)||(33267557-33267616)
chr2 (187-229)||(43065475-43065517)
chr2 (176-229)||(3070271-3070324)
chr2 (184-229)||(6988115-6988160)
chr2 (184-229)||(15780077-15780122)
chr2 (185-229)||(3078665-3078709)
chr2 (184-236)||(12289797-12289849)
chr2 (184-236)||(16867739-16867791)
chr2 (184-236)||(26202028-26202080)
chr2 (184-240)||(43985017-43985073)
[»] chr8 (8 HSPs)
chr8 (156-236)||(6875285-6875365)
chr8 (156-229)||(39881777-39881852)
chr8 (160-212)||(5383127-5383179)
chr8 (184-227)||(30627929-30627972)
chr8 (184-229)||(43504751-43504796)
chr8 (184-236)||(7514813-7514865)
chr8 (187-231)||(7918469-7918513)
chr8 (184-236)||(39551227-39551279)
[»] chr3 (14 HSPs)
chr3 (184-229)||(2318644-2318690)
chr3 (163-229)||(20669151-20669217)
chr3 (162-212)||(25185963-25186013)
chr3 (184-229)||(40665429-40665474)
chr3 (184-229)||(51510218-51510263)
chr3 (184-219)||(2100190-2100225)
chr3 (156-191)||(31337471-31337506)
chr3 (156-238)||(2825120-2825201)
chr3 (156-229)||(23793553-23793629)
chr3 (156-218)||(42808944-42809006)
chr3 (184-229)||(14548746-14548791)
chr3 (189-229)||(8933792-8933832)
chr3 (184-236)||(39980729-39980781)
chr3 (191-239)||(44284095-44284143)
[»] chr7 (13 HSPs)
chr7 (156-220)||(39591508-39591572)
chr7 (190-229)||(35267368-35267407)
chr7 (161-218)||(19624196-19624253)
chr7 (184-228)||(32210267-32210311)
chr7 (161-192)||(819829-819860)
chr7 (156-191)||(31338473-31338508)
chr7 (156-191)||(46531498-46531533)
chr7 (156-229)||(18749842-18749915)
chr7 (168-229)||(39360007-39360068)
chr7 (184-229)||(44241859-44241904)
chr7 (184-228)||(33346807-33346851)
chr7 (184-236)||(36484053-36484105)
chr7 (183-231)||(39542323-39542371)
[»] chr6 (9 HSPs)
chr6 (156-220)||(32386140-32386204)
chr6 (184-239)||(25100043-25100098)
chr6 (184-228)||(33067158-33067202)
chr6 (184-227)||(33787772-33787815)
chr6 (193-239)||(2455819-2455865)
chr6 (183-229)||(31812038-31812084)
chr6 (184-229)||(2117403-2117448)
chr6 (184-228)||(8010357-8010401)
chr6 (184-220)||(8201233-8201269)
[»] chr1 (12 HSPs)
chr1 (156-239)||(23895301-23895384)
chr1 (176-229)||(27140470-27140523)
chr1 (184-236)||(42174855-42174907)
chr1 (184-239)||(15515541-15515596)
chr1 (184-219)||(28482268-28482303)
chr1 (184-231)||(39596597-39596644)
chr1 (183-229)||(5924054-5924100)
chr1 (184-226)||(46504246-46504288)
chr1 (184-236)||(473164-473216)
chr1 (156-236)||(2522601-2522681)
chr1 (137-181)||(12763056-12763100)
chr1 (156-192)||(43420223-43420259)
[»] chr5 (7 HSPs)
chr5 (185-228)||(17777910-17777953)
chr5 (186-229)||(40205099-40205142)
chr5 (190-228)||(11457105-11457143)
chr5 (184-229)||(17368676-17368721)
chr5 (184-229)||(29659351-29659396)
chr5 (184-229)||(37588385-37588430)
chr5 (184-236)||(33533557-33533609)
[»] scaffold0167 (1 HSPs)
scaffold0167 (184-229)||(17276-17321)


Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 253
Target Start/End: Original strand, 56007518 - 56007748
Alignment:
Q  17 actagtaaactacaattttccatatttaagcctttaaggagtcctatcaagagaggctgcccaacactaatgtgcttataatatatgtgcttttatgaac 116  Q
    ||||||||||||||||||||||||||||        ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  56007518 actagtaaactacaattttccatattta--------aggagtcctatcaagagaggctgtccaacactaatgtgcttataatatatgtgcttttatgaac 56007609  T
Q  117 aaattaactaagcgcttttatataaaatgtttctatgac--aagaaaaaataaagtcaaactgtttttatataagttgtttttataagttatcttggaga 214  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56007610 aaattaactaagcgcttttatataaaatgtttctatgacaaaagaaaaaataaagtcaaactgtttttatataagttgtttttataagttatcttggaga 56007709  T
Q  215 gcttatagaaataagttcaaaatagacaatcggcatgtc 253  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  56007710 gcttatagaaataagttcaaaatagacaatcgacatgtc 56007748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 18628644 - 18628568
Alignment:
Q  160 aaaaataaagtcaaactgtttttatataagtt-------gtttttataagttatcttggagagcttatagaaataag 229  Q
    ||||||| ||||||||||||||||||||||||       ||||| ||||||||||||||||||||||| ||||||||    
T  18628644 aaaaatatagtcaaactgtttttatataagttataaactgttttcataagttatcttggagagcttatggaaataag 18628568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 217
Target Start/End: Original strand, 32764906 - 32764967
Alignment:
Q  156 aagaaaaaataaagtcaaactgtttttatataagttgtttttataagttatcttggagagct 217  Q
    |||||||||||||| || ||||||||||||||||||| |||| |||| |||| |||||||||    
T  32764906 aagaaaaaataaaggcagactgtttttatataagttgattttgtaagctatcatggagagct 32764967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 19250546 - 19250593
Alignment:
Q  184 tataagttgtttttataagttatcttggagagcttatagaaataagtt 231  Q
    ||||||||||||||||||||||||||| ||||| |||| |||||||||    
T  19250546 tataagttgtttttataagttatcttgaagagcatataaaaataagtt 19250593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 4798664 - 4798584
Alignment:
Q  156 aagaaaaaataaagtcaaactgtttttatataagttgtttttataagttatcttggagagcttatagaaataagttcaaaa 236  Q
    |||| ||||||||||| || ||||||  |  |||||||||| ||||| |||||||||||||||||  ||||||| ||||||    
T  4798664 aagataaaataaagtctaaatgttttcctgcaagttgttttcataagctatcttggagagcttatgcaaataagctcaaaa 4798584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 191
Target Start/End: Complemental strand, 46013405 - 46013370
Alignment:
Q  156 aagaaaaaataaagtcaaactgtttttatataagtt 191  Q
    |||| |||||||||||||||||||||||||||||||    
T  46013405 aagataaaataaagtcaaactgtttttatataagtt 46013370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 46019731 - 46019663
Alignment:
Q  156 aagaaaaaataaagtcaaactgtttttata----taagttgtttttataagttatcttggagagcttat 220  Q
    |||||||||||||| |||||||||||||||    ||||||||||| ||||||||||  | |||||||||    
T  46019731 aagaaaaaataaagccaaactgtttttatacaagtaagttgttttcataagttatcccgaagagcttat 46019663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 52259631 - 52259686
Alignment:
Q  184 tataagttgtttttataagttatcttggagagcttatagaaataagttcaaaatag 239  Q
    |||||| |||||||||||| ||||| |||||||||||  ||||||||| |||||||    
T  52259631 tataagctgtttttataagctatctgggagagcttatgaaaataagttgaaaatag 52259686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 190
Target Start/End: Complemental strand, 19429593 - 19429559
Alignment:
Q  156 aagaaaaaataaagtcaaactgtttttatataagt 190  Q
    |||| ||||||||||||||||||||||||||||||    
T  19429593 aagataaaataaagtcaaactgtttttatataagt 19429559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 30581747 - 30581702
Alignment:
Q  184 tataagttgtttttataagttatcttggagagcttatagaaataag 229  Q
    |||||| |||||| |||||||||||||||||| |||| ||||||||    
T  30581747 tataagctgttttaataagttatcttggagagtttatggaaataag 30581702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 2996573 - 2996625
Alignment:
Q  184 tataagttgtttttataagttatcttggagagcttatagaaataagttcaaaa 236  Q
    ||||||||||||| ||||| ||||||||||||| |||  ||||||||| ||||    
T  2996573 tataagttgttttcataagctatcttggagagcgtatgaaaataagttgaaaa 2996625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 16494875 - 16494823
Alignment:
Q  184 tataagttgtttttataagttatcttggagagcttatagaaataagttcaaaa 236  Q
    ||||||||||||| ||||| ||||||||||||||| || || |||||| ||||    
T  16494875 tataagttgttttcataagctatcttggagagcttgtaaaactaagttgaaaa 16494823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 17975438 - 17975394
Alignment:
Q  185 ataagttgtttttataagttatcttggagagcttatagaaataag 229  Q
    ||||| |||||||||||| ||||||||||||||| | ||||||||    
T  17975438 ataagctgtttttataagctatcttggagagcttctggaaataag 17975394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 27721711 - 27721751
Alignment:
Q  178 tttttatataagttgtttttataagttatcttggagagctt 218  Q
    |||||||||||| |||||| |||||||||| ||||||||||    
T  27721711 tttttatataagctgttttcataagttatcctggagagctt 27721751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 36722739 - 36722683
Alignment:
Q  184 tataagttgtttttataagttatcttggagagcttatagaaataagttcaaaataga 240  Q
    ||||||||||||| |||||||||| || |||||||||  ||||||| | ||||||||    
T  36722739 tataagttgttttgataagttatcctgaagagcttatgaaaataagcttaaaataga 36722683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 44797886 - 44797938
Alignment:
Q  184 tataagttgtttttataagttatcttggagagcttatagaaataagttcaaaa 236  Q
    ||||||||||||||||||| | | |||||||||||||| | ||||||| ||||    
T  44797886 tataagttgtttttataagctgtattggagagcttataaagataagttaaaaa 44797938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 188
Target Start/End: Original strand, 46247183 - 46247215
Alignment:
Q  156 aagaaaaaataaagtcaaactgtttttatataa 188  Q
    |||| ||||||||||||||||||||||||||||    
T  46247183 aagataaaataaagtcaaactgtttttatataa 46247215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 55414490 - 55414438
Alignment:
Q  184 tataagttgtttttataagttatcttggagagcttatagaaataagttcaaaa 236  Q
    ||||| ||||||| ||||||||||||||||| |||||  ||||||||| ||||    
T  55414490 tataaattgttttcataagttatcttggagaacttatgaaaataagttgaaaa 55414438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 156 - 229
Target Start/End: Complemental strand, 28677757 - 28677684
Alignment:
Q  156 aagaaaaaataaagtcaaactgtttttatataagttgtttttataagttatcttggagagcttatagaaataag 229  Q
    |||| |||||||||||||| ||||| | |||||||||| ||| |||||||| ||||||||||||| ||||||||    
T  28677757 aagataaaataaagtcaaaatgtttatgtataagttgtctttgtaagttattttggagagcttatggaaataag 28677684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 33267616 - 33267557
Alignment:
Q  161 aaaataaagtcaaactgtttttatataagttgtttttataagttatcttggagagcttat 220  Q
    |||||||||| |||||||||| ||||||| |||||||||||| |||  ||||||||||||    
T  33267616 aaaataaagttaaactgttttcatataagctgtttttataagctatgctggagagcttat 33267557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 43065517 - 43065475
Alignment:
Q  187 aagttgtttttataagttatcttggagagcttatagaaataag 229  Q
    |||||||||| |||||||||| |||||||||||| ||||||||    
T  43065517 aagttgttttcataagttatcgtggagagcttattgaaataag 43065475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 3070324 - 3070271
Alignment:
Q  176 tgtttttatataagttgtttttataagttatcttggagagcttatagaaataag 229  Q
    |||||| ||||||| |||||| |||||  |||||||||||||| ||||||||||    
T  3070324 tgttttcatataagctgttttcataagccatcttggagagcttctagaaataag 3070271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 6988115 - 6988160
Alignment:
Q  184 tataagttgtttttataagttatcttggagagcttatagaaataag 229  Q
    ||||||||||||| ||||| ||||||| |||| |||||||||||||    
T  6988115 tataagttgttttcataagctatcttgaagagtttatagaaataag 6988160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 15780077 - 15780122
Alignment:
Q  184 tataagttgtttttataagttatcttggagagcttatagaaataag 229  Q
    ||||||||||||| ||||| |||| || ||||||||||||||||||    
T  15780077 tataagttgttttcataagctatcgtgcagagcttatagaaataag 15780122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 3078709 - 3078665
Alignment:
Q  185 ataagttgtttttataagttatcttggagagcttatagaaataag 229  Q
    ||||| |||||||||||| ||||||||||||||| | ||||||||    
T  3078709 ataagctgtttttataagctatcttggagagcttctggaaataag 3078665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 12289797 - 12289849
Alignment:
Q  184 tataagttgtttttataagttatcttggagagcttatagaaataagttcaaaa 236  Q
    |||||||||||||||||| |||| ||||||| |||||  ||||||||| ||||    
T  12289797 tataagttgtttttataatttatattggagaacttatgaaaataagttgaaaa 12289849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 16867739 - 16867791
Alignment:
Q  184 tataagttgtttttataagttatcttggagagcttatagaaataagttcaaaa 236  Q
    |||||| |||||| | ||| ||||||||||||||||| |||||||||| ||||    
T  16867739 tataaggtgttttcacaagctatcttggagagcttatggaaataagttgaaaa 16867791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 26202028 - 26202080
Alignment:
Q  184 tataagttgtttttataagttatcttggagagcttatagaaataagttcaaaa 236  Q
    ||||||||||||||||||| ||| ||||||| |||||  ||||||||| ||||    
T  26202028 tataagttgtttttataagatatattggagaacttatgaaaataagttgaaaa 26202080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 43985073 - 43985017
Alignment:
Q  184 tataagttgtttttataagttatcttggagagcttatagaaataagttcaaaataga 240  Q
    ||||||||||||| ||||| ||||||| |||||||||  ||||||| | ||||||||    
T  43985073 tataagttgttttcataagctatcttgaagagcttatgaaaataagctgaaaataga 43985017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 6875365 - 6875285
Alignment:
Q  156 aagaaaaaataaagtcaaactgtttttatataagttgtttttataagttatcttggagagcttatagaaataagttcaaaa 236  Q
    |||| |||||||||||||||| |||| ||||||||| |||| ||| | ||||||||||||||||  |||||||||| ||||    
T  6875365 aagacaaaataaagtcaaactattttcatataagttattttcatatgctatcttggagagcttaaggaaataagttgaaaa 6875285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 229
Target Start/End: Complemental strand, 39881852 - 39881777
Alignment:
Q  156 aagaaaaaataaagtcaaactgtttttata--taagttgtttttataagttatcttggagagcttatagaaataag 229  Q
    |||| |||||||||||||| ||||||| ||  ||| ||||||||||||| |||| |||||||||||| ||||||||    
T  39881852 aagataaaataaagtcaaattgtttttgtaaataaattgtttttataagctatcatggagagcttatggaaataag 39881777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 5383127 - 5383179
Alignment:
Q  160 aaaaataaagtcaaactgtttttatataagttgtttttataagttatcttgga 212  Q
    ||||||||||||||| |||||| |||||||||||||| ||||| |||| ||||    
T  5383127 aaaaataaagtcaaattgttttcatataagttgttttcataagctatcctgga 5383179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 30627972 - 30627929
Alignment:
Q  184 tataagttgtttttataagttatcttggagagcttatagaaata 227  Q
    ||||||||||||| |||||||||||| |||||||||| ||||||    
T  30627972 tataagttgttttcataagttatcttagagagcttatggaaata 30627929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 43504751 - 43504796
Alignment:
Q  184 tataagttgtttttataagttatcttggagagcttatagaaataag 229  Q
    |||||| |||||||||||| ||||||||||| ||||| ||||||||    
T  43504751 tataagatgtttttataagctatcttggagaacttatggaaataag 43504796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 7514813 - 7514865
Alignment:
Q  184 tataagttgtttttataagttatcttggagagcttatagaaataagttcaaaa 236  Q
    |||||| |||||  ||||| ||| |||||||||||||||||||||||| ||||    
T  7514813 tataagctgtttcgataagctatattggagagcttatagaaataagttgaaaa 7514865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 7918513 - 7918469
Alignment:
Q  187 aagttgtttttataagttatcttggagagcttatagaaataagtt 231  Q
    ||||||||||  |||| ||||||||||||||||| ||||||||||    
T  7918513 aagttgttttcgtaagctatcttggagagcttattgaaataagtt 7918469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 39551279 - 39551227
Alignment:
Q  184 tataagttgtttttataagttatcttggagagcttatagaaataagttcaaaa 236  Q
    ||||||||||||| ||||| | || ||||||||||||| ||||||||| ||||    
T  39551279 tataagttgttttcataagctttcctggagagcttataaaaataagttaaaaa 39551227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 2318644 - 2318690
Alignment:
Q  184 tataagttgtttttataagttat-cttggagagcttatagaaataag 229  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  2318644 tataagttgtttttataagttattcttggagagcttatagaaataag 2318690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 20669151 - 20669217
Alignment:
Q  163 aataaagtcaaactgtttttatataagttgtttttataagttatcttggagagcttatagaaataag 229  Q
    |||||||||||| |||| | ||||||| |||||| ||||| |||||||||||||||||  |||||||    
T  20669151 aataaagtcaaaatgttgtcatataagctgttttcataagctatcttggagagcttatgtaaataag 20669217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 25185963 - 25186013
Alignment:
Q  162 aaataaagtcaaactgtttttatataagttgtttttataagttatcttgga 212  Q
    |||||||||||||  |||||||||||||| ||||||||||| |||||||||    
T  25185963 aaataaagtcaaatggtttttatataagtggtttttataagctatcttgga 25186013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 40665429 - 40665474
Alignment:
Q  184 tataagttgtttttataagttatcttggagagcttatagaaataag 229  Q
    |||||| |||||| |||||||||||||||||||||||| |||||||    
T  40665429 tataagatgttttcataagttatcttggagagcttataaaaataag 40665474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 51510263 - 51510218
Alignment:
Q  184 tataagttgtttttataagttatcttggagagcttatagaaataag 229  Q
    ||||||||||||| |||||||||| |||||||||||| ||||||||    
T  51510263 tataagttgttttcataagttatcgtggagagcttatggaaataag 51510218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 219
Target Start/End: Complemental strand, 2100225 - 2100190
Alignment:
Q  184 tataagttgtttttataagttatcttggagagctta 219  Q
    ||||||||||||| ||||||||||||||||||||||    
T  2100225 tataagttgttttcataagttatcttggagagctta 2100190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 191
Target Start/End: Complemental strand, 31337506 - 31337471
Alignment:
Q  156 aagaaaaaataaagtcaaactgtttttatataagtt 191  Q
    |||| |||||||||||||||||||||||||||||||    
T  31337506 aagataaaataaagtcaaactgtttttatataagtt 31337471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 238
Target Start/End: Original strand, 2825120 - 2825201
Alignment:
Q  156 aagaaaaaataaagtcaaactgtttttatataagttgtttttataagttatcttggagagcttatagaaataagttcaaaata 238  Q
    |||| |||||||||| |||| ||||| || |||||| |||| ||||| |||||||||||||||||  ||||||| | ||||||    
T  2825120 aagataaaataaagtaaaac-gttttcatgtaagttattttcataagctatcttggagagcttatgaaaataagcttaaaata 2825201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 229
Target Start/End: Original strand, 23793553 - 23793629
Alignment:
Q  156 aagaaaaaataaagtcaaactgtttttatataag---ttgtttttataagttatcttggagagcttatagaaataag 229  Q
    |||| |||||||||||||| || ||| |||||||   ||| ||| ||||| ||||||||| ||||||||||||||||    
T  23793553 aagataaaataaagtcaaaatgatttcatataagcaattggtttcataagctatcttggaaagcttatagaaataag 23793629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 42808944 - 42809006
Alignment:
Q  156 aagaaaaaataaagtcaaactgtttttatataagttgtttttataagttatcttggagagctt 218  Q
    |||| |||||||||| ||| |||||||||||||| |||||| ||||| | ||| |||||||||    
T  42808944 aagataaaataaagttaaattgtttttatataagctgttttcataagctctctcggagagctt 42809006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 14548791 - 14548746
Alignment:
Q  184 tataagttgtttttataagttatcttggagagcttatagaaataag 229  Q
    ||||||||||||| |||||||||  |||||||||||| ||||||||    
T  14548791 tataagttgttttcataagttattctggagagcttatggaaataag 14548746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 8933792 - 8933832
Alignment:
Q  189 gttgtttttataagttatcttggagagcttatagaaataag 229  Q
    |||||||| |||||||||||||||||||||||  |||||||    
T  8933792 gttgttttcataagttatcttggagagcttatgaaaataag 8933832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 39980729 - 39980781
Alignment:
Q  184 tataagttgtttttataagttatcttggagagcttatagaaataagttcaaaa 236  Q
    ||||||||||||||||||| ||| ||||||| |||||  ||||||||| ||||    
T  39980729 tataagttgtttttataagctatattggagaacttatgaaaataagttgaaaa 39980781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 239
Target Start/End: Complemental strand, 44284143 - 44284095
Alignment:
Q  191 tgtttttataagttatcttggagagcttatagaaataagttcaaaatag 239  Q
    |||||| ||||| |||| ||||||||||||||||||||| | |||||||    
T  44284143 tgttttcataagctatcctggagagcttatagaaataagctgaaaatag 44284095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 39591572 - 39591508
Alignment:
Q  156 aagaaaaaataaagtcaaactgtttttatataagttgtttttataagttatcttggagagcttat 220  Q
    |||| |||||||||||||| |||||| |||||||||||||| ||||||| |  ||||||||||||    
T  39591572 aagataaaataaagtcaaattgttttcatataagttgttttgataagttttgctggagagcttat 39591508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 35267368 - 35267407
Alignment:
Q  190 ttgtttttataagttatcttggagagcttatagaaataag 229  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  35267368 ttgtttttttaagttatcttggagagcttatagaaataag 35267407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 19624196 - 19624253
Alignment:
Q  161 aaaataaagtcaaactgtttttatataagttgtttttataagttatcttggagagctt 218  Q
    |||||||||| ||||| |||| |||||||||||||| |||||||||| | ||||||||    
T  19624196 aaaataaagtaaaactattttcatataagttgttttcataagttatcctagagagctt 19624253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 32210267 - 32210311
Alignment:
Q  184 tataagttgtttttataagttatcttggagagcttatagaaataa 228  Q
    ||||||||||||||||||| |||||| |||||||||| |||||||    
T  32210267 tataagttgtttttataagctatctttgagagcttatggaaataa 32210311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 192
Target Start/End: Complemental strand, 819860 - 819829
Alignment:
Q  161 aaaataaagtcaaactgtttttatataagttg 192  Q
    ||||||||||||||||||||||||||||||||    
T  819860 aaaataaagtcaaactgtttttatataagttg 819829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 191
Target Start/End: Original strand, 31338473 - 31338508
Alignment:
Q  156 aagaaaaaataaagtcaaactgtttttatataagtt 191  Q
    |||| |||||||||||||||||||||||||||||||    
T  31338473 aagataaaataaagtcaaactgtttttatataagtt 31338508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 191
Target Start/End: Original strand, 46531498 - 46531533
Alignment:
Q  156 aagaaaaaataaagtcaaactgtttttatataagtt 191  Q
    |||| |||||||||||||||||||||||||||||||    
T  46531498 aagataaaataaagtcaaactgtttttatataagtt 46531533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 229
Target Start/End: Complemental strand, 18749915 - 18749842
Alignment:
Q  156 aagaaaaaataaagtcaaactgtttttatataagttgtttttataagttatcttggagagcttatagaaataag 229  Q
    |||| ||| |||||||||||| |||||||||||| |||||| ||||| ||||  ||| | ||||| ||||||||    
T  18749915 aagataaagtaaagtcaaactatttttatataagctgttttcataagctatcacggaaaacttatggaaataag 18749842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 39360007 - 39360068
Alignment:
Q  168 agtcaaactgtttttatataagttgtttttataagttatcttggagagcttatagaaataag 229  Q
    |||||||||||||| ||||||| |||||| | ||| |||| ||| |||||||| ||||||||    
T  39360007 agtcaaactgttttcatataagatgttttcaaaagctatcctggcgagcttattgaaataag 39360068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 44241859 - 44241904
Alignment:
Q  184 tataagttgtttttataagttatcttggagagcttatagaaataag 229  Q
    ||||||||||||| ||||| ||||||| | ||||||||||||||||    
T  44241859 tataagttgttttcataagctatcttgaatagcttatagaaataag 44241904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 33346807 - 33346851
Alignment:
Q  184 tataagttgtttttataagttatcttggagagcttatagaaataa 228  Q
    ||||||||| | | ||||| |||||||||||||||||||||||||    
T  33346807 tataagttgatctcataagctatcttggagagcttatagaaataa 33346851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 36484105 - 36484053
Alignment:
Q  184 tataagttgtttttataagttatcttggagagcttatagaaataagttcaaaa 236  Q
    ||||||||||||| | |||||||| || |||||||||||||||| ||| ||||    
T  36484105 tataagttgttttcacaagttatcctgaagagcttatagaaatatgttgaaaa 36484053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 39542371 - 39542323
Alignment:
Q  183 atataagttgtttttataagttatcttggagagcttatagaaataagtt 231  Q
    |||||||||||||  |||||||||| ||||||||||||  |||||||||    
T  39542371 atataagttgtttccataagttatcctggagagcttatgaaaataagtt 39542323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 32386204 - 32386140
Alignment:
Q  156 aagaaaaaataaagtcaaactgtttttatataagttgtttttataagttatcttggagagcttat 220  Q
    |||| |||||||||| |||||||||||||||||| |||||| || ||||||| |||| |||||||    
T  32386204 aagataaaataaagtaaaactgtttttatataagctgttttcattagttatcctggaaagcttat 32386140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 25100043 - 25100098
Alignment:
Q  184 tataagttgtttttataagttatcttggagagcttatagaaataagttcaaaatag 239  Q
    ||||||||||||| ||||| ||||||  |||||||||||||||||||| |||||||    
T  25100043 tataagttgttttcataagctatcttaaagagcttatagaaataagttgaaaatag 25100098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 33067158 - 33067202
Alignment:
Q  184 tataagttgtttttataagttatcttggagagcttatagaaataa 228  Q
    ||||||||||||| ||||| ||||||||||||||| |||||||||    
T  33067158 tataagttgttttcataagctatcttggagagcttgtagaaataa 33067202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 33787815 - 33787772
Alignment:
Q  184 tataagttgtttttataagttatcttggagagcttatagaaata 227  Q
    |||||| |||||| ||||||||||||||||||||||| ||||||    
T  33787815 tataagctgttttcataagttatcttggagagcttatggaaata 33787772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 239
Target Start/End: Original strand, 2455819 - 2455865
Alignment:
Q  193 tttttataagttatcttggagagcttatagaaataagttcaaaatag 239  Q
    |||| ||||| ||||||||||||||||| |||||||||| |||||||    
T  2455819 ttttcataagctatcttggagagcttatggaaataagttgaaaatag 2455865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 31812084 - 31812038
Alignment:
Q  183 atataagttgtttttataagttatcttggagagcttatagaaataag 229  Q
    |||||||||||||| ||||| |||||||||||||||||  |||||||    
T  31812084 atataagttgttttcataagctatcttggagagcttatgaaaataag 31812038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 2117403 - 2117448
Alignment:
Q  184 tataagttgtttttataagttatcttggagagcttatagaaataag 229  Q
    ||||||||||||| |||||||||| | |||||||||| ||||||||    
T  2117403 tataagttgttttcataagttatcctagagagcttattgaaataag 2117448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 8010357 - 8010401
Alignment:
Q  184 tataagttgtttttataagttatcttggagagcttatagaaataa 228  Q
    |||||| |||||| |||||||||| |||||| |||||||||||||    
T  8010357 tataagctgttttaataagttatcctggagaacttatagaaataa 8010401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 8201233 - 8201269
Alignment:
Q  184 tataagttgtttttataagttatcttggagagcttat 220  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  8201233 tataagttgtttttataagttatgttggagaacttat 8201269  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 239
Target Start/End: Original strand, 23895301 - 23895384
Alignment:
Q  156 aagaaaaaataaagtcaaactgtttttatataagttgtttttataagttatcttggagagcttatagaaataagttcaaaatag 239  Q
    |||| |||||||| |||||||||| | ||||| | | |||||||||  ||||||||||||||| | |||||||||| |||||||    
T  23895301 aagataaaataaattcaaactgttctcatatatgctatttttataaactatcttggagagcttgtggaaataagttaaaaatag 23895384  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 27140470 - 27140523
Alignment:
Q  176 tgtttttatataagttgtttttataagttatcttggagagcttatagaaataag 229  Q
    |||||||||||||| |||||||||||| |||| ||||||||||||  |||||||    
T  27140470 tgtttttatataagctgtttttataagctatcatggagagcttatgcaaataag 27140523  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 42174855 - 42174907
Alignment:
Q  184 tataagttgtttttataagttatcttggagagcttatagaaataagttcaaaa 236  Q
    ||||||||||||||||||||||| ||||||| |||||  ||||||||| ||||    
T  42174855 tataagttgtttttataagttatattggagaacttatgaaaataagttaaaaa 42174907  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 15515541 - 15515596
Alignment:
Q  184 tataagttgtttttataagttatcttggagagcttatagaaataagttcaaaatag 239  Q
    ||||||||||||| |||||||||| |||| ||||||| ||||||| || |||||||    
T  15515541 tataagttgttttcataagttatcatggatagcttatggaaataaattgaaaatag 15515596  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 219
Target Start/End: Complemental strand, 28482303 - 28482268
Alignment:
Q  184 tataagttgtttttataagttatcttggagagctta 219  Q
    |||||| |||||||||||||||||||||||||||||    
T  28482303 tataagctgtttttataagttatcttggagagctta 28482268  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 39596597 - 39596644
Alignment:
Q  184 tataagttgtttttataagttatcttggagagcttatagaaataagtt 231  Q
    |||||| || ||||||||| |||||||||||||||||| |||||||||    
T  39596597 tataagatggttttataagctatcttggagagcttataaaaataagtt 39596644  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 5924054 - 5924100
Alignment:
Q  183 atataagttgtttttataagttatcttggagagcttatagaaataag 229  Q
    |||||||||||||| |||||||||| | |||||||||| ||||||||    
T  5924054 atataagttgttttcataagttatcctagagagcttatggaaataag 5924100  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 46504288 - 46504246
Alignment:
Q  184 tataagttgtttttataagttatcttggagagcttatagaaat 226  Q
    ||||||||||||| ||||||||||||| |||| ||||||||||    
T  46504288 tataagttgttttgataagttatcttgaagagtttatagaaat 46504246  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 473164 - 473216
Alignment:
Q  184 tataagttgtttttataagttatcttggagagcttatagaaataagttcaaaa 236  Q
    ||||||||||||||||||||| | ||||||| |||||  ||||||||| ||||    
T  473164 tataagttgtttttataagttctattggagaacttatgaaaataagttgaaaa 473216  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 236
Target Start/End: Original strand, 2522601 - 2522681
Alignment:
Q  156 aagaaaaaataaagtcaaactgtttttatataagttgtttttataagttatcttggagagcttatagaaataagttcaaaa 236  Q
    |||| |||||||||| |||||| ||||||||||| |||||| ||||  |||  ||||||  |||| |||||||||| ||||    
T  2522601 aagataaaataaagttaaactgattttatataagctgttttcataaactattctggagaatttatggaaataagttgaaaa 2522681  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 181
Target Start/End: Original strand, 12763056 - 12763100
Alignment:
Q  137 tataaaatgtttctatgacaagaaaaaataaagtcaaactgtttt 181  Q
    |||||| | |||||||||||||| |||||| ||||||||||||||    
T  12763056 tataaagtatttctatgacaagataaaatatagtcaaactgtttt 12763100  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 43420223 - 43420259
Alignment:
Q  156 aagaaaaaataaagtcaaactgtttttatataagttg 192  Q
    |||| |||||||||||||||| |||||||||||||||    
T  43420223 aagataaaataaagtcaaactttttttatataagttg 43420259  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 228
Target Start/End: Original strand, 17777910 - 17777953
Alignment:
Q  185 ataagttgtttttataagttatcttggagagcttatagaaataa 228  Q
    |||||||||||| |||||||||| |||||||||||| |||||||    
T  17777910 ataagttgttttcataagttatcctggagagcttatcgaaataa 17777953  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 40205142 - 40205099
Alignment:
Q  186 taagttgtttttataagttatcttggagagcttatagaaataag 229  Q
    ||||||||||| ||||| |||| |||||||||||||||||||||    
T  40205142 taagttgttttcataagctatcctggagagcttatagaaataag 40205099  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 11457105 - 11457143
Alignment:
Q  190 ttgtttttataagttatcttggagagcttatagaaataa 228  Q
    ||||||| | |||||||||||||||||||||||||||||    
T  11457105 ttgttttcaaaagttatcttggagagcttatagaaataa 11457143  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 17368676 - 17368721
Alignment:
Q  184 tataagttgtttttataagttatcttggagagcttatagaaataag 229  Q
    ||||||||||||| ||||| |||||||||||| |||| ||||||||    
T  17368676 tataagttgttttcataagctatcttggagaggttatggaaataag 17368721  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 29659351 - 29659396
Alignment:
Q  184 tataagttgtttttataagttatcttggagagcttatagaaataag 229  Q
    ||||||||||||| |||||||||||| ||||| ||||| |||||||    
T  29659351 tataagttgttttcataagttatcttagagagtttatataaataag 29659396  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 37588430 - 37588385
Alignment:
Q  184 tataagttgtttttataagttatcttggagagcttatagaaataag 229  Q
    ||||||||||||| |||||||||  |||||||||||| ||||||||    
T  37588430 tataagttgttttcataagttattctggagagcttatggaaataag 37588385  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 33533609 - 33533557
Alignment:
Q  184 tataagttgtttttataagttatcttggagagcttatagaaataagttcaaaa 236  Q
    |||||| |||||| | ||| ||||||||||||||||| |||||||||| ||||    
T  33533609 tataaggtgttttcacaagctatcttggagagcttatggaaataagttgaaaa 33533557  T

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Target: scaffold0167 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 17276 - 17321
Alignment:
Q  184 tataagttgtttttataagttatcttggagagcttatagaaataag 229  Q
    ||||||||||||| ||||| ||||||||||| ||||||| ||||||    
T  17276 tataagttgttttcataagctatcttggagaacttatagcaataag 17321  T

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