View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_17 (Length: 581)
Name: NF11745_low_17
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 186 - 564
Target Start/End: Complemental strand, 2186574 - 2186196
Alignment:
| Q |
186 |
tactgtctctattgctgaaagaaaaaagttgcagatcctttttaccaagttaatagacccattatattatattacacttcttgttagttcaaatggtaag |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2186574 |
tactgtctctattgctgaaagaaaaaagttgcagatcctttttaccaagttaatagacccattatattatattacacttcttgttagttcaaatggtaag |
2186475 |
T |
|
| Q |
286 |
gaaattggttttcatagtattaggttcaagtcttacaaatggaaaatatagctactgtgagagatttaccctcttaaatgggttcacttagctgtgctca |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2186474 |
gaaattggttttcatagtattaggttcaagtcttacaaatggaaaatatagctactgtgagagatttaccctcttaaatgggttcacttagctgtgctca |
2186375 |
T |
|
| Q |
386 |
aagttgcttccaaattcaaaccaaaaactactacaaaactgtttaaaggttgtgcattttccattcttagcaaattgttcctcatgccgtggtattaaaa |
485 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2186374 |
aagttgcttccaaattcaaaccaaaaactactacaaaactgtttaaaggttgtgcattttccattcttagcaaattgttcctcatgccgtggtattaaaa |
2186275 |
T |
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| Q |
486 |
tattcgcagaacacaaatcgatgatcaatgtatgattgttaaacatgatcaaggatccggttcaaattaacattggctt |
564 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2186274 |
tattcgcagaacacaaatcgatgatcaatgtatgattgttaaacatgatcaaggatccggttcaaattaacattggctt |
2186196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 186 - 564
Target Start/End: Complemental strand, 2192848 - 2192470
Alignment:
| Q |
186 |
tactgtctctattgctgaaagaaaaaagttgcagatcctttttaccaagttaatagacccattatattatattacacttcttgttagttcaaatggtaag |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2192848 |
tactgtctctattgctgaaagaaaaaagttgcagatcctttttaccaagttaatagacccattatattatattacacttcttgttagttcaaatggtaag |
2192749 |
T |
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| Q |
286 |
gaaattggttttcatagtattaggttcaagtcttacaaatggaaaatatagctactgtgagagatttaccctcttaaatgggttcacttagctgtgctca |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2192748 |
gaaattggttttcatagtattaggttcaagtcttacaaatggaaaatatagctactgtgagagatttaccctcttaaatgggttcacttagctgtgctca |
2192649 |
T |
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| Q |
386 |
aagttgcttccaaattcaaaccaaaaactactacaaaactgtttaaaggttgtgcattttccattcttagcaaattgttcctcatgccgtggtattaaaa |
485 |
Q |
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| T |
2192648 |
aagttgcttccaaattcaaaccaaaaactactacaaaactgtttaaaggttgtgcattttccattcttagcaaattgttcctcatgccgtggtattaaaa |
2192549 |
T |
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| Q |
486 |
tattcgcagaacacaaatcgatgatcaatgtatgattgttaaacatgatcaaggatccggttcaaattaacattggctt |
564 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2192548 |
tattcgcagaacacaaatcgatgatcaatgtatgattgttaaacatgatcaaggatccggttcaaattaacattggctt |
2192470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 3 - 114
Target Start/End: Complemental strand, 2186757 - 2186646
Alignment:
| Q |
3 |
atgagaggatttcccaagtttttatgacgttatccacataccaggccaatgtgaagttttaagaagtcttatgcataaatatgtctccatgatcatactt |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2186757 |
atgagaggatttcccaagtttttatgacgttatccacataccaggccaatgtgaagttttaataagtcttatgcataaatatgtctccatgatcatactt |
2186658 |
T |
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| Q |
103 |
tactttacttac |
114 |
Q |
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|||||||||||| |
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| T |
2186657 |
tactttacttac |
2186646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 3 - 114
Target Start/End: Complemental strand, 2193031 - 2192920
Alignment:
| Q |
3 |
atgagaggatttcccaagtttttatgacgttatccacataccaggccaatgtgaagttttaagaagtcttatgcataaatatgtctccatgatcatactt |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2193031 |
atgagaggatttcccaagtttttatgacgttatccacataccaggccaatgtgaagttttaataagtcttatgcataaatatgtctccatgatcatactt |
2192932 |
T |
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| Q |
103 |
tactttacttac |
114 |
Q |
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|||||||||||| |
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| T |
2192931 |
tactttacttac |
2192920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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