View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11745_low_170 (Length: 252)
Name: NF11745_low_170
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_170 |
 | |
|
| [»] scaffold0038 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 138 - 240
Target Start/End: Complemental strand, 26812198 - 26812096
Alignment:
| Q |
138 |
aagtcccacaacagggtgatcagcaacttctaaaagaccacggttgatcttgttggaaatctctgtaactatctctttaataaactcatattcatattca |
237 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| || |
|
|
| T |
26812198 |
aagtcccacaatagggtgatcagcaacttctaaaagaccacggttgatctttttggaaatctctgtaactatcttcttaataaactcatattcatatgca |
26812099 |
T |
|
| Q |
238 |
tct |
240 |
Q |
| |
|
||| |
|
|
| T |
26812098 |
tct |
26812096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 138 - 240
Target Start/End: Complemental strand, 26618310 - 26618208
Alignment:
| Q |
138 |
aagtcccacaacagggtgatcagcaacttctaaaagaccacggttgatcttgttggaaatctctgtaactatctctttaataaactcatattcatattca |
237 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
26618310 |
aagtccaacaactaggtgatcagcaacttctaaaagaccacaattgatcttgttccaaatctctgtaactatcttcttaataaactcgtattcatattca |
26618211 |
T |
|
| Q |
238 |
tct |
240 |
Q |
| |
|
||| |
|
|
| T |
26618210 |
tct |
26618208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 138 - 240
Target Start/End: Complemental strand, 26724238 - 26724136
Alignment:
| Q |
138 |
aagtcccacaacagggtgatcagcaacttctaaaagaccacggttgatcttgttggaaatctctgtaactatctctttaataaactcatattcatattca |
237 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
26724238 |
aagtccaacaactaggtgatcagcaacttctaaaagaccacaattgatcttgttccaaatctctgtaactatcttcttaataaactcgtattcatattca |
26724139 |
T |
|
| Q |
238 |
tct |
240 |
Q |
| |
|
||| |
|
|
| T |
26724138 |
tct |
26724136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 28242357 - 28242426
Alignment:
| Q |
1 |
ttaagtgatattttgtttggacctcaaaaat--ttccgatatttaatctcatctaccaaactgatatttc |
68 |
Q |
| |
|
|||||| ||||||||||| |||||||||| | || |||||||||||||||||||||||||||| ||||| |
|
|
| T |
28242357 |
ttaagtaatattttgtttagacctcaaaagtctttacgatatttaatctcatctaccaaactgacatttc |
28242426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 27671397 - 27671458
Alignment:
| Q |
1 |
ttaagtgatattttgtttggacctcaaaa--atttccgatatttaatctcatctaccaaact |
60 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||| ||||||||||| ||||||||||||| |
|
|
| T |
27671397 |
ttaagtgatattttgtttggatctcaaaagtctttctgatatttaatcacatctaccaaact |
27671458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 235
Target Start/End: Original strand, 27664733 - 27664811
Alignment:
| Q |
157 |
tcagcaacttctaaaagaccacggttgatcttgttggaaatctctgtaactatctctttaataaactcatattcatatt |
235 |
Q |
| |
|
|||||||| | |||| ||| |||||||||||||||||| | ||||||||||| |||| |||||| | |||||||||| |
|
|
| T |
27664733 |
tcagcaacatgtaaatgacaacggttgatcttgttggagacgtctgtaactatttcttcaataaatttgtattcatatt |
27664811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 146 - 236
Target Start/End: Complemental strand, 26136553 - 26136463
Alignment:
| Q |
146 |
caacagggtgatcagcaacttctaaaagaccacggttgatcttgttggaaatctctgtaactatctctttaataaactcatattcatattc |
236 |
Q |
| |
|
|||| |||||||| ||||| | ||||||| |||||||||||||||| |||||| |||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
26136553 |
caacggggtgatcggcaacatgtaaaagaacacggttgatcttgtttgaaatcactgtaactatcttcttaataaactcatattcgtattc |
26136463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 42519 - 42588
Alignment:
| Q |
1 |
ttaagtgatattttgtttggacctcaaaaat--ttccgatatttaatctcatctaccaaactgatatttc |
68 |
Q |
| |
|
|||||| ||||||||||| |||||||||| | || |||||||||||||||||||||||||||| ||||| |
|
|
| T |
42519 |
ttaagtaatattttgtttagacctcaaaagtctttacgatatttaatctcatctaccaaactgacatttc |
42588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University