View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_172 (Length: 251)
Name: NF11745_low_172
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_172 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 53493426 - 53493647
Alignment:
| Q |
19 |
aataaaatcatataaatgatcactcttttctcaattttatcaagaataataataaaagtgtattaagtctgactatctatacttggatttctaattctct |
118 |
Q |
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| T |
53493426 |
aataaaatcatataaatgatcactcttttctcaattttatcaagaataataataaaagtgtattaagtctgactatctatacttggatttctaattctct |
53493525 |
T |
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| Q |
119 |
taatattgcagagtttgaattagaagaccaaagaacataattcttgctgttggaatgacaaattacgttcaactctccattcaaaaattaagtgtagtga |
218 |
Q |
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| T |
53493526 |
taatattgcagagtttgaattagaagaccaaagaacataattcttgctgttggaatgacaaattacgttcaactgtccattcacaaattaagtgtagtga |
53493625 |
T |
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| Q |
219 |
ttgttctatcttttcatctcac |
240 |
Q |
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| T |
53493626 |
ttgttctatcttttcatctcac |
53493647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 16072587 - 16072748
Alignment:
| Q |
19 |
aataaaatcatataaatgatcactcttttctcaattttatcaagaataataataaaagtgtattaa--gtctgactatctatacttggatttctaattct |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| || | ||||||| |||||||||||||||||||||||||||| ||| |
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| T |
16072587 |
aataaaatcatataaatgatcactcttttctcaattttattgagaatagtag---aggtgtatttgttgtctgactatctatacttggatttctaactct |
16072683 |
T |
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| Q |
117 |
cttaatattgcagagtttgaattagaagaccaaagaacataattcttgctgttggaatgacaaat |
181 |
Q |
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| T |
16072684 |
ctcagtgttgcaaagtttaaatcagaagaccaaagatcaaaattcttgtggttggaaagacaaat |
16072748 |
T |
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