View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_176 (Length: 250)
Name: NF11745_low_176
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_176 |
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| [»] chr7 (7 HSPs) |
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| [»] scaffold0064 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-125; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 7328533 - 7328296
Alignment:
| Q |
13 |
aaggcaaaactaagtacataaattgaaataaatattatgttggagaaaaacttacattcagcaggttgaaaccagactttcgacataatccttgatagag |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7328533 |
aaggcaaaactaagtacataaattgaaataaatattatgttggagaaaaacttactttcagcaggttgaaaccagactttcgacataatccttgatagag |
7328434 |
T |
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| Q |
113 |
taccaacatatctttttgttaactctagattccagtagtctattagttctcaagttatagagaattgcttggttatgtaggcagcttgcgaatacgattg |
212 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
7328433 |
taccaacatatctttttgttaactctagattccagtactctattagttctcaagttatagagaattgcttggttatgcaggcagcttgcgaatacgattg |
7328334 |
T |
|
| Q |
213 |
tatcaccatcttcagaaagatgcaatgcctttaatttc |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
7328333 |
tatcaccatcttcagaaagatgcaatgcctttaatttc |
7328296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 7306378 - 7306603
Alignment:
| Q |
18 |
aaaactaagtacataaattgaaataaatattatgttggagaaaaacttacattcagcaggttgaaaccagactttcgacataatccttgatagagtacca |
117 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
7306378 |
aaaaccaagtacataaattgaaataaatattatgttggagaaaaacctacgttcaataggttgagaccagactttcgacataatccttgatagagaacca |
7306477 |
T |
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| Q |
118 |
acatatctttttgttaactctagattccagtagtctattagttctcaagttatagagaattgcttggttatgtaggcagcttgcgaatacgattgtatca |
217 |
Q |
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||||||||||||||| |||||||||| ||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
7306478 |
acatatctttttgttgactctagatttcagtactctattagttctcaagttatacagaattgcttggttatctaggcagcttgcgaatacgattgtatca |
7306577 |
T |
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| Q |
218 |
ccatcttcagaaagatgcaatgcctt |
243 |
Q |
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|||||||||||||||||||||||||| |
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| T |
7306578 |
ccatcttcagaaagatgcaatgcctt |
7306603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 24 - 250
Target Start/End: Original strand, 7310936 - 7311162
Alignment:
| Q |
24 |
aagtacataaattgaaataaatattatgttggagaaaaacttacattcagcaggttgaaaccagactttcgacataatccttgatagagtaccaacatat |
123 |
Q |
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||||||||||| |||||||||||||||||| || |||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7310936 |
aagtacataaactgaaataaatattatgttagaaaaaaacttactttcaataggttgaaaccagactttcgacataatccttgatagagaaccaacatat |
7311035 |
T |
|
| Q |
124 |
ctttttgttaactctagattccagtagtctattagttctcaagttatagagaattgcttggttatgtaggcagcttgcgaatacgattgtatcaccatct |
223 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||| ||||||||||||||| |
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| T |
7311036 |
ctttttgttaactctagatttcagtactctattagttctcaagttatacagaattgcttggttatctaggcagcttccgaatactattgtatcaccatct |
7311135 |
T |
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| Q |
224 |
tcagaaagatgcaatgcctttaatttc |
250 |
Q |
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|||||||||||||| | |||||||||| |
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| T |
7311136 |
tcagaaagatgcaacggctttaatttc |
7311162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 55 - 239
Target Start/End: Original strand, 35205658 - 35205850
Alignment:
| Q |
55 |
gagaaaaacttacattcagcaggttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaactctagattccagtagtcta |
154 |
Q |
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||||| |||||||||||| | ||||||||||| |||||||||||||||||||||| | ||||||||||||| ||||||| | ||||| ||||| |||| |
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| T |
35205658 |
gagaacaacttacattcaactagttgaaaccaggctttcgacataatccttgatagtgaaccaacatatcttattgttaattgaagatttcagtactcta |
35205757 |
T |
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| Q |
155 |
ttagttctcaagttatagagaat-----tgcttggttatgtaggcagcttgc---gaatacgattgtatcaccatcttcagaaagatgcaatg |
239 |
Q |
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|| |||||| ||||||||||||| | |||||| | |||| | |||| |||||||| |||||||||||| |||||||||||||||| |
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| T |
35205758 |
ttggttctccagttatagagaatataattacttggtgttttaggttgtttgctgcgaatacgagtgtatcaccatcctcagaaagatgcaatg |
35205850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 77 - 239
Target Start/End: Complemental strand, 20415161 - 20414999
Alignment:
| Q |
77 |
gttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaactctagattccagtagtctattagttctcaagttatagagaa |
176 |
Q |
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||||||||||||||||| |||||| ||||||||| |||||||| | || ||||||||||| | || || || | ||||| ||||| | |||||||||| |
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| T |
20415161 |
gttgaaaccagactttcaacataacagttgatagagaaccaacatttgttattgttaactctgggtttcaatactatattatttctccaattatagagaa |
20415062 |
T |
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| Q |
177 |
ttgcttggttatgtaggcagcttgcgaatacgattgtatcaccatcttcagaaagatgcaatg |
239 |
Q |
| |
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||||| ||| ||||||| | |||||||||| | ||||||||||| || |||||||||||| |
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| T |
20415061 |
ttgctcggtcttgtaggctgtttgcgaatacaagtgtatcaccatttttgaaaagatgcaatg |
20414999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 78 - 250
Target Start/End: Original strand, 21210247 - 21210418
Alignment:
| Q |
78 |
ttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaactctagattccagtagtctattagttctcaagttatagagaat |
177 |
Q |
| |
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|||||||||||||| |||||||||||| | || || |||||| |||||| | ||||| | | |||| ||||| | ||||| |||| |||||||| |||| |
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| T |
21210247 |
ttgaaaccagactt-cgacataatcctcggtacagaaccaacgtatcttatggttaattttggatttcagtactgtattatttctgaagttatatagaac |
21210345 |
T |
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| Q |
178 |
tgcttggttatgtaggcagcttgcgaatacgattgtatcaccatcttcagaaagatgcaatgcctttaatttc |
250 |
Q |
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||||||||| || ||| | || ||||||| ||||||||| || |||||||||||||| | |||||||||| |
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| T |
21210346 |
tgcttggttttgcaggttgtttacgaatactattgtatcaatattttcagaaagatgcaccggctttaatttc |
21210418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 140
Target Start/End: Original strand, 21218469 - 21218553
Alignment:
| Q |
56 |
agaaaaacttacattcagcaggttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaactctag |
140 |
Q |
| |
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|||| ||||||| |||| | |||||||||| |||||||||||||| | || ||| |||||| |||||||||||||| ||||| |
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| T |
21218469 |
agaagaacttactttcaagaagttgaaaccaagctttcgacataatcatagactgaggaccaacttatctttttgttaattctag |
21218553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 55 - 180
Target Start/End: Original strand, 31442749 - 31442874
Alignment:
| Q |
55 |
gagaaaaacttacattcagcaggttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaactctagattccagtagtcta |
154 |
Q |
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||||| ||||||| |||| | |||||||||| ||||||||||||| || |||||| ||||||||||||||||||||||||||| || || || |||| |
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| T |
31442749 |
gagaagaacttactttcaacttgttgaaaccaagctttcgacataatggtttatagagaaccaacatatctttttgttaactctagttttcactactcta |
31442848 |
T |
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| Q |
155 |
ttagttctcaagttatagagaattgc |
180 |
Q |
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||| ||||| | |||||||||||||| |
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| T |
31442849 |
ttatttctccaattatagagaattgc |
31442874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 186
Target Start/End: Complemental strand, 24491 - 24360
Alignment:
| Q |
55 |
gagaaaaacttacattcagcaggttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaactctagattccagtagtcta |
154 |
Q |
| |
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||||| ||||||| ||| || |||| ||||| ||||| ||||||| || ||||| |||||||||||||||||||||| |||| || || || |||| |
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| T |
24491 |
gagaagaacttactctcaacaagttggaaccatgctttcaacataattgtttatagatcaccaacatatctttttgttaaccctagttttcactactcta |
24392 |
T |
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| Q |
155 |
ttagttctcaagttatagagaattgcttggtt |
186 |
Q |
| |
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||| || || | ||||||||||||||| |||| |
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| T |
24391 |
ttatttatccaattatagagaattgctcggtt |
24360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 134
Target Start/End: Complemental strand, 42298420 - 42298342
Alignment:
| Q |
56 |
agaaaaacttacattcagcaggttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaa |
134 |
Q |
| |
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|||| ||||||| |||| | |||||||||| |||||||||||||| || || ||| |||||||||||||| |||||| |
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| T |
42298420 |
agaagaacttactttcaagaagttgaaaccaagctttcgacataatctttcattgaggaccaacatatctttctgttaa |
42298342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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