View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_178 (Length: 250)
Name: NF11745_low_178
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_178 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 49690571 - 49690330
Alignment:
| Q |
1 |
ctaaaatgtaaaacataaactaaagccattcaattgtgttaaacaatttgttccacacttttaatttgcacgacataaatatattcttcgaagcaaattg |
100 |
Q |
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| T |
49690571 |
ctaaaatgtaaaacataaactaaagccattcaattgtgttaaacaatttgttccacacttttaatttgcacgacataaatatattctttgaagcaaattg |
49690472 |
T |
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| Q |
101 |
acacgctagttgacttggaaaatgagtaccacacaagtcttatgaatttgtagttatcaccggccacaatgacttgcggctaaaattgaccaccatttat |
200 |
Q |
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| T |
49690471 |
acacgctagttgacttggaaaatgagtaccacacaagtcttgtaaatttgtagttatcaccggccacaatgacttgcagctaaaattgaccaccatttat |
49690372 |
T |
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| Q |
201 |
ttcttttgaaattgaaatccacttcttgctaaattctctgct |
242 |
Q |
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| T |
49690371 |
ttcttttgaaattgaaatccacttcttgctaaattctctgct |
49690330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 31 - 145
Target Start/End: Complemental strand, 49678885 - 49678769
Alignment:
| Q |
31 |
caattgtgttaaacaatttgttccacacttt--taatttgcacgacataaatatattcttcgaagcaaattgacacgctagttgacttggaaaatgagta |
128 |
Q |
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| T |
49678885 |
caattgtgtttatcaatttgttccacactttcttaatttgtagtgcataaagatatccttctgagccaattgacacgttagttgacttgtaaaatgagta |
49678786 |
T |
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| Q |
129 |
ccacacaagtcttatga |
145 |
Q |
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| T |
49678785 |
ccacacaagtcttatga |
49678769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 49686303 - 49686170
Alignment:
| Q |
18 |
aactaaagccattcaattgtgttaaacaatttgttccacactt-ttaatttgcacgacataaatatattcttcgaagcaaattgacacgc--tagttgac |
114 |
Q |
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| T |
49686303 |
aactagagccatcctattctgtttcacaatttgttccacacttgttaatttgcacaacataaatatatcctttgaagccaattgacacgctatagttgac |
49686204 |
T |
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| Q |
115 |
ttggaaaatgagtaccacacaagtcttatgaatttgt |
151 |
Q |
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| T |
49686203 |
ttggaaaat---tactacacaagtcatgtgaatttgt |
49686170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 49686140 - 49686094
Alignment:
| Q |
194 |
catttatttcttttgaaattgaaatccacttcttgctaaattctctg |
240 |
Q |
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| T |
49686140 |
catttatttgttttgaaattgaaacccaatttttgctaaattctctg |
49686094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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