View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_18 (Length: 576)
Name: NF11745_low_18
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 11 - 567
Target Start/End: Original strand, 51900653 - 51901205
Alignment:
| Q |
11 |
agacatacataaaaattttgacatgatgaaaaatgttgaatatactaaaaaattcactatctgcatcataaagacagagcgccgtatgttcagaaagcag |
110 |
Q |
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| T |
51900653 |
agacatacattaaaattttgacatgatgaaaaatgttgaatatactaaaaaattccctatctgcatcataaagacagagcgccgtatgttcagaaagcag |
51900752 |
T |
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| Q |
111 |
cgacaacacaatagagataaagatgagacaaagtaaagtattggaccactcactcactacatccttatttccagcgtacccccacaccannnnnnnnntc |
210 |
Q |
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| T |
51900753 |
cgacaacacaatagagataaagatgagacaaagtaaagtattggaccactcactcactacatccttatttccagcgtacccccacaccacacccc----c |
51900848 |
T |
|
| Q |
211 |
cctcccttccgtacgcttcctaataagagacttcacctttgcctccatcaattcctaggatatacctacctcttaacctttcctatgtaacccatccatc |
310 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51900849 |
cctcccttacgtacgcttcctaataagagacttcacctttgcctccatcaattcctaggatatacctacctcttaacctttcctatgtaacccatccatc |
51900948 |
T |
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| Q |
311 |
tatcacaaaatatttacattactatttcaaatatactcatatatagtagtatattatttgtgtataaattcatcctctagctatcacttgctctcacttt |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51900949 |
tatcacaaaatatttacattactatttcaaatatactcatatatagtagtatattatttgtgtataaattcatcctctagctatcacttgctctcacttt |
51901048 |
T |
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| Q |
411 |
gtcttcatcttttattctctcttttctttttggtttgaaaagtgaacaagaaatttagttgaatataatgaagttctgctgctgttttgagccacgagtg |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51901049 |
gtcttcatcttttattctctcttttctttttggtttgaaaagtgaacaagaaatttagttgaatataatgaagttctgctgctgttttgagccacgagtg |
51901148 |
T |
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| Q |
511 |
gtgtttgtgcatgggaagaggaagttgaggagcttgttttggagggttagggctgat |
567 |
Q |
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|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
51901149 |
gtgtttatgcatgggaagagaaagttgaggagcttgttttggagggttagggctgat |
51901205 |
T |
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