View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_181 (Length: 247)
Name: NF11745_low_181
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_181 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 41153838 - 41153616
Alignment:
| Q |
1 |
gtaactcctctccatgtttggcatacagaagaattctcatcccaattgaagtgtggagagtggtttatgttgtgaaggaaatcaagtaaagcttgtttat |
100 |
Q |
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| T |
41153838 |
gtaacccctctccatgtttggcatacagaagaattctcatcccaattgaagtgtggagagtggtttatgttgtgaaggaaatcaagtaaagcttgtttat |
41153739 |
T |
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| Q |
101 |
cttccaatggttcagcttcaatacaaaccaatactgctgaaaatatgaacaagagaaatagtttcttgtccannnnnnnngacttgaagagagaagaaca |
200 |
Q |
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| T |
41153738 |
cttccaatggttcagcttcaatacaaaccaatactgctgaaaatatgaacaagagaaatagtttcttgtccattttttttgacttgaagagagaagaaca |
41153639 |
T |
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| Q |
201 |
acactagatgtaaagtaacaagg |
223 |
Q |
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| T |
41153638 |
acactagatgtaaagtaacaagg |
41153616 |
T |
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Back To:
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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 133
Target Start/End: Original strand, 9838392 - 9838468
Alignment:
| Q |
57 |
agagtggtttatgttgtgaaggaaatcaagtaaagcttgtttatcttccaatggttcagcttcaatacaaaccaata |
133 |
Q |
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| T |
9838392 |
agagtggttcattttgtgaaggaaatcaagcaaagcttgtttatctgctgctggttcagctccaacacaaacaaata |
9838468 |
T |
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