View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11745_low_185 (Length: 245)

Name: NF11745_low_185
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11745_low_185
NF11745_low_185
[»] chr4 (7 HSPs)
chr4 (4-224)||(4337083-4337303)
chr4 (4-223)||(4319188-4319416)
chr4 (15-221)||(4122538-4122747)
chr4 (4-120)||(4132616-4132729)
chr4 (13-220)||(4346553-4346766)
chr4 (170-222)||(4132520-4132572)
chr4 (13-120)||(4362742-4362849)
[»] chr6 (7 HSPs)
chr6 (4-120)||(5065447-5065563)
chr6 (5-115)||(5253715-5253825)
chr6 (4-120)||(5126627-5126743)
chr6 (14-120)||(5177930-5178036)
chr6 (14-120)||(5279755-5279861)
chr6 (4-120)||(5346210-5346326)
chr6 (14-120)||(5688901-5689007)
[»] chr7 (1 HSPs)
chr7 (4-120)||(36212919-36213035)
[»] chr3 (2 HSPs)
chr3 (4-108)||(47985403-47985507)
chr3 (4-108)||(48003977-48004081)


Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 4337083 - 4337303
Alignment:
Q  4 tgaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 103  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4337083 tgaggagtggcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 4337182  T
Q  104 tatctcatatatcatgacgaaaaatttgagcaatgtcatgcaccagatgagaatgttctcgttgagagtggtgataaaaatgaatgtgctgccaagagga 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4337183 tatctcatatatcatgacgaaaaatttgagcaatgtcatgcaccagatgagaatgttctcgttgagagtggtgataaaaatgaatgtgctgccaagagga 4337282  T
Q  204 tctctcttcaagtagagcctg 224  Q
    |||||||||||||||||||||    
T  4337283 tctctcttcaagtagagcctg 4337303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 4 - 223
Target Start/End: Complemental strand, 4319416 - 4319188
Alignment:
Q  4 tgaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 103  Q
    |||||||  ||||||||| ||| ||||||||||||||||||| || || ||||||||||| ||||||||||||||||  |||||||||| |||| |||||    
T  4319416 tgaggagtggcagagagttgtaacaaatatggaacctggtgacaaggtggagattgttgtcgtttttgggaacagtttcattgtgatgaagacagcagtt 4319317  T
Q  104 tatctcatatatcatga---------cgaaaaatttgagcaatgtcatgcaccagatgagaatgttctcgttgagagtggtgataaaaatgaatgtgctg 194  Q
    |||||||||||| ||||         ||||| ||| |||||||||||| |||||||| |||||||||| ||||| |  |||||| |||||||||||||||    
T  4319316 tatctcatatatgatgaaccagtcgtcgaaatattggagcaatgtcatacaccagataagaatgttcttgttgatatcggtgatgaaaatgaatgtgctg 4319217  T
Q  195 ccaagaggatctctcttcaagtagagcct 223  Q
    ||| |||||||||||  ||||||||||||    
T  4319216 ccatgaggatctctcgccaagtagagcct 4319188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 4122747 - 4122538
Alignment:
Q  15 agagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtttatctcatata 114  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||  |||||||||| |||| ||||||||||||||||    
T  4122747 agagagtggtatcaaatatggaacctggtgacaaagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatata 4122648  T
Q  115 tcatga---------cgaaaaatttgagcaatgtcatgcaccagatgagaatgttctcgttgagagtggtgataaaaatgaatgtgctgccaagaggatc 205  Q
    | ||||          |||||| | |||||||| ||||||||| || ||||||||   ||||   |||||| | |||||||||| |||||||||||| ||    
T  4122647 tgatgaaccaatcggtgaaaaaatagagcaatgccatgcaccaaataagaatgtt---gttg---gtggtgctgaaaatgaatgcgctgccaagagggtc 4122554  T
Q  206 tctcttcaagtagagc 221  Q
    ||||| ||||||||||    
T  4122553 tctctgcaagtagagc 4122538  T

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Target: chr4; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 4 - 120
Target Start/End: Complemental strand, 4132729 - 4132616
Alignment:
Q  4 tgaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 103  Q
    |||||||  ||||||||| ||||||||||||||||||||||| ||||||||||||||   |||||||||||||||||  |||||||||| |||| |||||    
T  4132729 tgaggagtggcagagagtagtatcaaatatggaacctggtgacaaagtcgagattgt---tgtttttgggaacagtttcattgtgatgaagacagcagtt 4132633  T
Q  104 tatctcatatatcatga 120  Q
    |||||||||||| ||||    
T  4132632 tatctcatatatgatga 4132616  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 220
Target Start/End: Original strand, 4346553 - 4346766
Alignment:
Q  13 gcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtttatctcata 112  Q
    ||||||| || |||| ||||||||||||||||| ||||| ||||| ||||||||| | | ||||| |   ||||||| || |||| ||||||||||||||    
T  4346553 gcagagaatgatatcgaatatggaacctggtgacaaagtggagatagttgttgttatggtgaacaatgtcattgtgacgaagacagcagtttatctcata 4346652  T
Q  113 tatca---------tgacgaaaaatttgagcaatgtcatgcaccagatgagaatgttctcgttgagagtggtgataaaaatgaatgtgctgccaagagga 203  Q
    ||| |         |||||||||| | || || ||| |||||||||||  ||||||| | ||||   |||||||| ||||||||||  || |||||||||    
T  4346653 tatgatgaaccaattgacgaaaaaatagaccattgtgatgcaccagatatgaatgttattgttg---gtggtgatgaaaatgaatgctcttccaagagga 4346749  T
Q  204 tctctcttcaagtagag 220  Q
    | |||| ||||||||||    
T  4346750 tttctcctcaagtagag 4346766  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 4132572 - 4132520
Alignment:
Q  170 agtggtgataaaaatgaatgtgctgccaagaggatctctcttcaagtagagcc 222  Q
    ||||||||| ||||||||||||||||||||||| || ||||||||||||||||    
T  4132572 agtggtgatgaaaatgaatgtgctgccaagaggttcactcttcaagtagagcc 4132520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 4362742 - 4362849
Alignment:
Q  13 gcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtttatctcata 112  Q
    |||||||||| |||||||||||||||||||||| ||||| ||||| ||| ||||  | | ||||| |   ||||||| || |||| ||||||||||||||    
T  4362742 gcagagagtgatatcaaatatggaacctggtgacaaagtggagatagttattgtaatggtgaacaatgtcattgtgacgaagacagcagtttatctcata 4362841  T
Q  113 tatcatga 120  Q
    ||| ||||    
T  4362842 tatgatga 4362849  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 120
Target Start/End: Complemental strand, 5065563 - 5065447
Alignment:
Q  4 tgaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 103  Q
    |||||||| ||||||||| ||||||| ||| ||||||||  ||||||| ||  ||||||||||||||| |||| |||   |||||| |||||||||||||    
T  5065563 tgaggaggggcagagagtagtatcaagtattgaacctggaaataaagtggattttgttgttgtttttgagaacggtttcgttgtgaagaggacaacagtt 5065464  T
Q  104 tatctcatatatcatga 120  Q
    |||||||||||| ||||    
T  5065463 tatctcatatatgatga 5065447  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 115
Target Start/End: Original strand, 5253715 - 5253825
Alignment:
Q  5 gaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagttt 104  Q
    ||||||| ||| |||||  ||| || ||| ||||||||  ||||||| ||| ||||||||||||||| ||||||||  ||||||| |||||| |||||||    
T  5253715 gaggaggggcaaagagtattattaagtattgaacctggaaataaagtggagtttgttgttgtttttgagaacagtttcattgtgaagaggacgacagttt 5253814  T
Q  105 atctcatatat 115  Q
    |||||||||||    
T  5253815 atctcatatat 5253825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 120
Target Start/End: Complemental strand, 5126743 - 5126627
Alignment:
Q  4 tgaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 103  Q
    |||||||| | ||||||| ||||||| ||| ||| ||||| | ||||| ||||||||||||||||||  |||| |||  ||||||| || |||| | |||    
T  5126743 tgaggagggggagagagtagtatcaagtatagaagctggtaacaaagttgagattgttgttgtttttaagaacggtttcattgtgaagaagacagctgtt 5126644  T
Q  104 tatctcatatatcatga 120  Q
    |||||||||||| ||||    
T  5126643 tatctcatatatgatga 5126627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 5177930 - 5178036
Alignment:
Q  14 cagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtttatctcatat 113  Q
    |||||||| ||||||| ||| |||||| || | ||||| ||| ||||||||||||||| |||| |||  ||||||| ||  ||||||||||||||| |||    
T  5177930 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtat 5178029  T
Q  114 atcatga 120  Q
    || ||||    
T  5178030 atgatga 5178036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 5279755 - 5279861
Alignment:
Q  14 cagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtttatctcatat 113  Q
    |||||||| ||||||| ||| |||||| || | ||||| ||| ||||||||||||||| |||| |||  ||||||| ||  ||||||||||||||| |||    
T  5279755 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtat 5279854  T
Q  114 atcatga 120  Q
    || ||||    
T  5279855 atgatga 5279861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 120
Target Start/End: Original strand, 5346210 - 5346326
Alignment:
Q  4 tgaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 103  Q
    ||||||||  |||||||| ||||||| ||| ||||||||| | ||||| ||| |||| |||||| ||| |||  |||  ||||||| || |||| || ||    
T  5346210 tgaggagggccagagagttgtatcaagtatagaacctggtaacaaagtggaggttgtcgttgttattgagaatggtttcattgtgaagaagacagcaatt 5346309  T
Q  104 tatctcatatatcatga 120  Q
    |||||||||||| ||||    
T  5346310 tatctcatatatgatga 5346326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 120
Target Start/End: Complemental strand, 5689007 - 5688901
Alignment:
Q  14 cagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtttatctcatat 113  Q
    |||||||| ||||||| ||| |||||| || | ||||| ||| |||||  |||||||| |||| |||  ||||||| ||  ||||||||||||||| |||    
T  5689007 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtat 5688908  T
Q  114 atcatga 120  Q
    || ||||    
T  5688907 atgatga 5688901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 120
Target Start/End: Complemental strand, 36213035 - 36212919
Alignment:
Q  4 tgaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 103  Q
    |||||||| ||||||| | ||||||| ||| ||||||||||||||| | ||| ||||||||||||||| ||||| ||  ||||||| || |||| |  ||    
T  36213035 tgaggaggggcagagattagtatcaagtatagaacctggtgataaaatggaggttgttgttgtttttgagaacaatttcattgtgaagaagacagcgatt 36212936  T
Q  104 tatctcatatatcatga 120  Q
    |||||||| ||| ||||    
T  36212935 tatctcatttatgatga 36212919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 108
Target Start/End: Complemental strand, 47985507 - 47985403
Alignment:
Q  4 tgaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 103  Q
    |||||||| | ||||||| ||||||| ||| ||||| ||| | ||||| ||| | ||||||||||||| |||  |||  ||||||| ||||| | |||||    
T  47985507 tgaggagggggagagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtt 47985408  T
Q  104 tatct 108  Q
    |||||    
T  47985407 tatct 47985403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 108
Target Start/End: Complemental strand, 48004081 - 48003977
Alignment:
Q  4 tgaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 103  Q
    |||||||| | ||||||| ||||||| ||| ||||| ||| | ||||| ||| | ||||||||||||| |||  |||  ||||||| ||||| | |||||    
T  48004081 tgaggagggggagagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtt 48003982  T
Q  104 tatct 108  Q
    |||||    
T  48003981 tatct 48003977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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