View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_186 (Length: 245)
Name: NF11745_low_186
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_186 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 46 - 232
Target Start/End: Original strand, 8022668 - 8022854
Alignment:
| Q |
46 |
ttaacaagaaacaaaaaactaaatagaaagttgtataaattgttttgttttcttgaactcatcttttgaaagaacctttatatgatgagtgaaattattc |
145 |
Q |
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| T |
8022668 |
ttaacaagaaacaaaaaactaaatagaaagttgtataaactgttttgttttcttgaactcatcttttgaaagaacctttatatgatgagtgaaattactc |
8022767 |
T |
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| Q |
146 |
ttcttcttgatggggtgattgatttctatttcgtagtcgccgtggaaaagggaggcctcaaagtatccattttggtctgtagtccct |
232 |
Q |
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| T |
8022768 |
ttcttcttgatggggtgattgatttctatttcgtagtcgccgtgaaaaagggaggcctcaaagtatccattttggtctgtcgtccct |
8022854 |
T |
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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 232
Target Start/End: Original strand, 21542854 - 21543034
Alignment:
| Q |
52 |
agaaacaaaaaactaaatagaaagttgtataaattgttttgttttcttgaactcatcttttgaaagaacctttatatgatgagtgaaattattcttcttc |
151 |
Q |
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|||| |||| ||||||||||||| |||||||||||| ||||||||||| ||| ||||||||||| || | || |||||||||||| ||| |||||| |
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| T |
21542854 |
agaagcaaataactaaatagaaatttgtataaattgggttgttttcttggacttgtcttttgaaagcacttgtaactgatgagtgaaagtataattcttc |
21542953 |
T |
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| Q |
152 |
ttgatggggtgattgatttctatttcgtagtcgccgtggaaaagggaggcctcaaagtatccattttggtctgtagtccct |
232 |
Q |
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| T |
21542954 |
tttgcagagtgactaatttccattttgtagtcgccgtgaaaaagggaggccttaaggaacccatttttgtctgttgtccct |
21543034 |
T |
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