View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_192 (Length: 241)
Name: NF11745_low_192
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_192 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 14908079 - 14907857
Alignment:
| Q |
1 |
ccttcatgtacacggtcacgctcattatgactggttcgtagcggtggagggagtggaaatttgatcctatcttttgtgaggatgttgcagacatggtaga |
100 |
Q |
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| T |
14908079 |
ccttcatgtacacggtcacgctcattatgactggttcgtagcggtggagggagtggaaatttgatcctatcttttgtgaggatgttgcagacatggtaga |
14907980 |
T |
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| Q |
101 |
ctctaccacgtgtggttttcttgcacagaaacaagccattggaagatccaacaattctcgaatataagacattttattttcttgttatattgtcgagttt |
200 |
Q |
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| T |
14907979 |
ctctactacgtgtggttttcttgcacagaaacaagccattggaagatccaacaattctcgaatataagacattttattttcttgttatattgtcgagttt |
14907880 |
T |
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| Q |
201 |
agggtcgaattttcggcaaagaa |
223 |
Q |
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| T |
14907879 |
agggtcgaattttcggcaaagaa |
14907857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 51274043 - 51273828
Alignment:
| Q |
8 |
gtacacggtcacgctcattatgactggttcgtagcggtggagggagtggaaatttgatcctatcttttgtgaggatgttgcagacatggtagactctacc |
107 |
Q |
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| T |
51274043 |
gtacacggtcacgtttattgtgaccggttcccggcggtggagggagtggaagtttgatccaatcttttgtgaggatgttgcatacatggtagactctacc |
51273944 |
T |
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| Q |
108 |
acgtgtggttttcttgcacagaaacaagccattggaagatccaacaattctcgaatataagacattttattttcttgttatattgtcgagtttagggtcg |
207 |
Q |
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| T |
51273943 |
acgtgtggttttcttgcagagaaacaagccatttgaaaatccgacaattctcgaatataagacatgtttttttcttgttatattgtcaagtttaggatcg |
51273844 |
T |
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| Q |
208 |
aattttcggcaaagaa |
223 |
Q |
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| T |
51273843 |
aattttcggccaagaa |
51273828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 5051463 - 5051530
Alignment:
| Q |
146 |
atccaacaattctcgaatataagacattttattttcttgttatattgtcgagtttagggtcgaattttc |
214 |
Q |
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| T |
5051463 |
atccaacaattctcgaatataagg-atgattttatcttgttatattgtcgagtttagggtcgaattttc |
5051530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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